G88308


Basic Information

Item Value
gene id G88308
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29307879 ~ 29315559 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110209
GgtgcttcttttattttaaatggcattctACATACAAAGCTACAGATTTAAAAAGACTTTATGACCACCGCATTTATTTAGCGTGTAATGCTGTTTACATTTATAACGCTTATTTCACCATGTTTTAACAGCAAATTGCATCTAGAGTATCGCACCTGATTGACAGATAAATGTAGAGGTTAGacctttgtatttttctttaacttcactacatttttacattaatgaCAAactcattaatacattaaacctAGAGCTTTTTGTAAGGCATTGCTTCCATCCAGTATGGGTTTATAAACATACGGCTTGACATGTAACAATCACCTCAATGCATGCCTTGTTAATACTCACTGAATAACAATAGATATTAATAGCAGCAGTAGTAATAGCAGTTGTAATacttgttaattatttattaggtAGACATTTGCGCAATGTGATTtagagattttttattttttatgttaatctGATTAAGTGTTCAGTTAATTCATTTGACAGcaatcaaaatgtataaacttATTTGTATTcggttatattaaaaaaggaacatatctaaaatgtaataattgtgcACTTATTAGGTTCAAACAACCCGAAATGAACTGAAGCAAATGGATCGGAGTGACTCGACAACCATGACACTACAGGCCCGTTTGACTACTCCGTTTCAGTGAATCAAGTGAACCAATCTTTTGAATGGATTCAGTATAATGACTAAAACTGCACATAATTGGAACACAAACAAGGAAGCGCTGGGTCTGTGGTCGCGGTCTTGTAGCGCAATTTCCGCAGTCCAGcgctcccattggcggagcagcgcagatccgtgcagaactgcggaaatctgcgctacacgaccGCAACTTGCGTGTTACAATATTCAGCCTGCCTCTGCCGGGTCCCTGATTGGATTCATCCCTTAAACATCAACTGTGTAACATTGTCGCTGAAAACAGAGGAGAAATGCCTCCCATCTTTCACCGCATTGCAAGGAAAAAAAGGGGGTTCCATGCAAACTTTTCCTAAGAGGCTTGATTAGTAAATTCCTTTGCATTGTGTAATCCTGCAACACGGGGGACATGTCCCCCCCCACTTTTTGAAAGACAGGAATGTTATTCTTCTGTCAATTATTTTGATGTTAAACAGAtggattattatttcttgtagGAAGTTCCCAGTTTTAGATCTCCGTTTCACTGAACGTCCCCCAcacactttgaaaatgtaaggtCTTCCCGTGAGGTTGTCTCCTAAACTGGTTTTCCTCAAGACCAGATTATCACATACCAGCCCCAGATGGGGGCTTGTCAtgttggaaataaaaatgaaaattataaaagACATATGCTACTTGGGGCACATATGAATATTGAACACTTACACCTTtataatgatgtgtgtgtgtgtatatttacaaataaatctaTTGTCAAAGGGTGTAGAAAGCTAACAtgtcttttcagttttcaagtacaaataattgtctttgttcctttatttttaaagtgaaaatgtatcactagcatgaaaagaacaaaatctAAACCCTCTGCACTTAACTACATTAAGTGTGAAACATTAAGTTTGATTGATTTGGGAAAGTTTACAGTATCAACAACTGGTTTTCAAGGAGTCACTAGAGGTGGGCAGTAAACACTTGTATAATACATCTGCTAATCAGAGATGGTTGGGACATGATCTCACCAGACGGTTCCCTGTAATCCCATTACTTCATGGGGCAGTAGAGGAAAGTAGGACAAGCCATCACAATCCCTTTTTAAGCTTTGGCAAAGCTTTTGTTCTTATCAAGGCAATCCCAAAACACTATGCAGCAGACAGTATAACTTTGGTTGGCAgtaatcaatttattttcctcacCAAAtcgttttactgtttttttgtgtgtgtgttttaatagattttttgggGGCGCCCTCAGGTATCACAAAAGACCTGATGGGAATGCAGTTATTATAGAAATACACAACATCTTGACAAGATACTTGaacaattaattcaaaatgttcaaaaacaatttaaacgTAACATGCcttgtttgtatatatacaaaaaaacagggGCAGTTATAAAATTTATcagtgaactttttttttttttttttatagaaaaacaaaaacaaaagtggaatgtattgtaatttttctAGCATCCAAAGTTATGCAGTGCCAGTCTGAACATATCGTTACTGCAGATCCATTTGTTGTCTATGTTCTTCAGCAGGAACAGCTGGTGGAATCCCATCACTGGATCGTCATCCACcTCAGCTGGCCCACCACCATGCTGATGACACAGCTGTCTGGAGTGGGCTGGTGATCCTGCGCTGTGATGCTGTGCTGGATTTTCTGGAATGGGAGACAGTCAATTTTTCCATAATAGCGTTCTTGCCTTGAAAACCTTGGCCTTCCCATGTTAAACAGGAAGCATCTGTCTAAAACACCAAGAAGAAAAGCTCCAGACAGGCAAACTCAAAGACCATTGATTTCAATTTTCGAAAAACAAGGCGTTAATGATTAATAGGAAAATTCACTTTACAAGATCACATTGTGGAGTATGTTATACCAGCCCACTACCACAAATGTCACTATAgttgctttaataaaaataggaaaacatttgaaatttcACTTCATTGAGAATATATCttcataatttgcatttttagttACACTGGTTTGAACTAATATTGTTTCTGAAATCCCTGAACTAGTAATACTCATAGCTACTCATGACTGAATTGAGAGCACAGCagaacatatatacatatacatatacaggaCTACACCCAAGATGCATACTACACAGCACCCCCTTGTGAAAAcggtgcaaaataaaaaagaaaagaaatggacACCAAAGTTTTTAATATCACCACAAAAAGCAAGAATATGCAATAACTTTTCATTAAAGATGTTTAGAGATGACAACCACAATATTGCACATTGTCTTTAACATTTCTATAATGTGACAACTACTAGGATAATGTAACTTCACCAATTATGAATATCAAAATATGTCACAGCTAAAGCCTGAAACGCAAGCATTTGAAGAGCCCAGAAACGGATCTTGTGCACATGTTTTGGCCTGTGCGCTTGCGCAGCATTGGGCTAACCCGGCAAAGCAGCGAAACCAGAGAGAAGCGAGAAATACTTACGTAAAGGTCGCCCAGAAGCAGCCGGTTTGTGTCAAACTGTTGATAATAATGCTGTACAAAGCCGGTCCCGATTTGCTCCCACACAGGTTTATCCGCCATTTTTATGCGAATCCggatttaaatctgaaaataagtGCGCGGTTACCGTATCATTTTAAGTTCAAGAACACACTGAAAGTAAGCGATGTAAATAGAGTGCATACAGcattacaatttcaatataATGACCAATAATCTCCCGTAAAAGACAACAATAGTTAACGCATTACTTAAGTCACACactagaaatgtatttgactccTCTCTGAAGAAGGAAGCTGCTTTTCCCAGTTCATTTGAGCCACGACGTGCGTCCCTCCGACAGGCAGCGCCGAGCGCCCCACTCACTAACTACACCGACAATGAGACCCGCAACTGTCCAATACTTTCACCCCATTCAAAACTCGCAACATCGCTTGGTCACTATCCGCTGGAAAAATACCAAtgcaatattacaaataataagatGAACCATCACGCAACACATATTTTTGCCCATGAACTTTATTCGGGCGTGTTTTTGCGGGTATTATTTCGGTGCTCATACTCACAGCGCAGATGTTGCCACACGCCTGCAGGCCGGAAAGAAAGAACTCCCGCTCTGAGCGGAAAGCGTGCAGCGCTGACGTCACTCTGCGCAGCCCACCAATGCGCGGCCGGGAGCGCCTGTGCGCTGAGGCGCCTTCTTGTAGCGCAGACTTCtccagttctgcgcagatctgcaggatcccGCAAATCCCATTGGTGGTGCGGAGCAGATCGGCGCAGAAATGCGGGACTGTGCCCTGCGCCCCGGAGGACGCTTCGTGTTCACGGGAGTGGGCAGGTCTGCGCTGAAACGTGAGCAGGGAGGTCACTCGCACAACCGAGCCCCGACGATccacatattaaaaatacaaatcaagattTAATACTTATTAAAAG

Function

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU110209 True 4138 lncRNA 0.40 3 29307879 29315559

Neighbor

gene id symbol gene type direction distance location
AMCG00021769 NA coding upstream 84567 29210277 ~ 29223312 (+)
AMCG00021768 NA coding upstream 212618 29076101 ~ 29095261 (+)
AMCG00021766 cpsf1 coding upstream 265938 29025563 ~ 29041941 (+)
AMCG00021765 NA coding upstream 286138 29007396 ~ 29021741 (+)
AMCG00021764 NA coding upstream 301982 28991590 ~ 29005897 (+)
AMCG00021781 NA coding downstream 290581 29606140 ~ 29648683 (+)
AMCG00021782 NA coding downstream 437852 29753411 ~ 29782570 (+)
AMCG00021784 LOC107677448,LOC106606150 coding downstream 473175 29788734 ~ 29804747 (+)
AMCG00021785 gmpr,LOC108425204,LOC108257268,LOC103024228 coding downstream 499931 29815490 ~ 29830397 (+)
AMCG00021790 NA coding downstream 761813 30077372 ~ 30091490 (+)
G88307 NA non-coding upstream 9799 29297837 ~ 29298080 (+)
G88306 NA non-coding upstream 27046 29279177 ~ 29280833 (+)
G88249 NA non-coding upstream 337931 28921629 ~ 28969948 (+)
G88248 LOC101154678 non-coding upstream 405265 28902398 ~ 28902614 (+)
G88237 NA non-coding upstream 476556 28830906 ~ 28831323 (+)
G88352 NA non-coding downstream 60962 29376521 ~ 29388601 (+)
G88403 NA non-coding downstream 409600 29725159 ~ 29725962 (+)
G88440 NA non-coding downstream 659482 29975041 ~ 29978559 (+)
G88450 NA non-coding downstream 731569 30047128 ~ 30048888 (+)
G88454 NA non-coding downstream 821979 30137538 ~ 30139284 (+)
AMCG00021772 NA other upstream 32532 29264827 ~ 29275347 (+)
G88276 NA other upstream 242540 29060887 ~ 29065339 (+)
G88238 NA other upstream 529146 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 1670795 27632915 ~ 27637084 (+)
AMCG00021707 NA other upstream 2738731 26535093 ~ 26569148 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 63016 29378575 ~ 29385325 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 951843 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 1134398 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 5610994 34926553 ~ 35077090 (+)
G89142 NA other downstream 5895574 35211133 ~ 35263537 (+)

Expression


Co-expression Network