G88352


Basic Information

Item Value
gene id G88352
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29376521 ~ 29388601 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110262
tgattattacatatttattagtGTCATCTTCATTAATACTCTCCTAGTACATAgtgaattgcttaattaatcTTGAACAGAAGAATTGTTTGAGTTGTAAATATTGAGTAGATCACCCTCTAGTGGAACAAATTGTTAATGCATACATTCAACCTGGCACAACATTCAATTTACTCCACAGGAATTTGGattgttcattgttcattgGGGGTAACgctacaaaacaaacatcacaggAAGTCAGTTTAAAGTTGTGAAATTGAATGAAGAaatgaattgtgttttaaagcCCAATTTGACATGCATCAAACATTTAGAAGACAACACCCAGGGGCCCCATGCGATTCCAGGGGATCCTGTGCACTGTAAAGTTCCCCCGTCTTCACAGTCCACAAGTCAGGGTCTCACTTCATCGGGGGGCGGGCTGCCATTGAGAACAGCCAGGGTGTTAGTCACCATCCTCTCGACCATCTTCTGGCTTGTCTGGTACGTGTTGGTTCCCAAATGAGGCAACACAATGACGTTCTTAAGACTGAGCAATGGGTGATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110262 True 550 lncRNA 0.41 2 29376521 29388601

Neighbor

gene id symbol gene type direction distance location
AMCG00021769 NA coding upstream 153209 29210277 ~ 29223312 (+)
AMCG00021768 NA coding upstream 281260 29076101 ~ 29095261 (+)
AMCG00021766 cpsf1 coding upstream 334580 29025563 ~ 29041941 (+)
AMCG00021765 NA coding upstream 354780 29007396 ~ 29021741 (+)
AMCG00021764 NA coding upstream 370624 28991590 ~ 29005897 (+)
AMCG00021781 NA coding downstream 217539 29606140 ~ 29648683 (+)
AMCG00021782 NA coding downstream 364810 29753411 ~ 29782570 (+)
AMCG00021784 LOC107677448,LOC106606150 coding downstream 400133 29788734 ~ 29804747 (+)
AMCG00021785 gmpr,LOC108425204,LOC108257268,LOC103024228 coding downstream 426889 29815490 ~ 29830397 (+)
AMCG00021790 NA coding downstream 688771 30077372 ~ 30091490 (+)
G88308 NA non-coding upstream 60962 29307879 ~ 29315559 (+)
G88307 NA non-coding upstream 78441 29297837 ~ 29298080 (+)
G88306 NA non-coding upstream 95688 29279177 ~ 29280833 (+)
G88249 NA non-coding upstream 406573 28921629 ~ 28969948 (+)
G88248 LOC101154678 non-coding upstream 473907 28902398 ~ 28902614 (+)
G88403 NA non-coding downstream 336558 29725159 ~ 29725962 (+)
G88440 NA non-coding downstream 586440 29975041 ~ 29978559 (+)
G88450 NA non-coding downstream 658527 30047128 ~ 30048888 (+)
G88454 NA non-coding downstream 748937 30137538 ~ 30139284 (+)
G88452 NA non-coding downstream 753594 30142195 ~ 30219496 (+)
AMCG00021772 NA other upstream 101174 29264827 ~ 29275347 (+)
G88276 NA other upstream 311182 29060887 ~ 29065339 (+)
G88238 NA other upstream 597788 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 1739437 27632915 ~ 27637084 (+)
AMCG00021707 NA other upstream 2807373 26535093 ~ 26569148 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 878801 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 1061356 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 5537952 34926553 ~ 35077090 (+)
G89142 NA other downstream 5822532 35211133 ~ 35263537 (+)
G89299 NA other downstream 6575970 35964571 ~ 35967384 (+)

Expression


Co-expression Network