G88434


Basic Information

Item Value
gene id G88434
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29838518 ~ 29841539 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110362
tgtgtgtgttcgggctccattttttatgtttcctgaaaagaaaagtatatacCATATACCTTATGTGTTCTCCAGTCTATAAACAGTAAACACCTTGCAGTTGCATACATGATTTGGTTTTAAGCTGTACAGTGAGCGTGAAACATTGAGGAGTGTAAACTCATGATTCAAGACCCTGAAGTGGAAGTGGATCAGAAATAATGAAACCCAACCCATGCATTCGAAAATTGTAGTACTAGACCCTTTATAATGACACCTCCCAAATCATTTTTGAGAATCACACACTCAGTAACAGTGGcacttttataaatgatttgGAACGCTTTTAACTCCAATCACCGTCTGTATCGCACCCCAAAGACTGacttaaagttattttaaagggaaacaGTCCTGATGAATATGTGTTGAAGAGCTTTACATGCTTTAAGCtgtttacatttgctttttatttatgcCCATCTGGCTCATCCCGAATTAAGACACTGTTTCTCTGTTAGAAACAGTACCTTCTAAAGCACACTTAAGAGATGTACATTATGTGAATATATGGTCAAAGTTATATATAAGGTTTGTATTTAAGTTTGAAAAGTTCAATATTTAGTTCAATATTATCTTTGAACATTTAGTTTGGTAATGCAGTCCACTAAACATACTAAGCCTTTTTACCTagtagtgaaaaaaaaaagcaatgctcAGTTTGTCTTGCACAATTTTGCCGCTGTGCATTGGAGCACAAGGCTTTGAGAACTGTCACCGCTAGAAATTACAAAGACACACCCAAGGATTagcaatgaaattaaaaacaacagggATAAGTCTTCAGGCATCTGTAGTATATTGTCTTGACCTCAGGATTTCGGAGTGTTGTAATTTCAGATAACTTCACAGATAGGTTTTCTGATTATAATCCCATTTTAAAAACGTGCCCAATGCTCTCATCCGATGacagaacttttttttcttttttcctcgaAGTCCTGGTTATGCAGCAATATTTAGCAATGAGGGAATGCTCTCATTTAAGAAGATACATCTCTCTCATGTGAAATGTCTAAATACGGGGAGTCGATCAAGATTGGTGCACAGAATTCTGGTGAGAGACTTAGTGATTGTAATGGATCACAGTTTAGGGGCCCCACATTGGCTGCAATAGTCTTAATCTCCGGAGGAGGTTCAAAGGGCATGTTTCAAACTCCCCTGAGTGAGTTGCAGTGGCAGGGGCAGTAAAGGAGAGCGTGCAATCCAAAGTGTCTCAAGGCCTTTggagtaaaaaaagaaaaataaatgaaaacattgccTCACCCTTGTTCAATCAACTTACCTCACTCAGAGAAAGGTAAAGTTCTAGCTAGAGTAGACTAGGTGTCACAGCCTGCAGCATGAGACAATCAGACCAGTCAGATATTATATCAAGCAGTGCCATTCGTCCCTTAAGAAAGGAAAGGGAgcttttttaatagttttgagAAAAATAGAATCTGCTTTATTCTATAAAGCTCtagcagtgtttttttctttcttttttgtttgcttttttcctgttgtgtttttggaCTATTGTAACTGATGGGCagggtttgttttaatgaccGTTCACAACCTGAGTGGCAGAAGGAGTCACTTCAGTGGATTATATTGTGCTTAAAATGGGCATATGGCGTTCTAAACATGATAGGAGGGAGACGATAGCAAAACGCAATCCTTAAAATTAGAAACTACTGCCACCTTAACCTCTGTGTCAAGgctaacagaaaaataatgtgtgaCACAAGGTTAGTGGAGGTGAGACAGGTGATTGTCTTTAAGCACTTAAAATATCTGTCAAACTTATTTactgaaaattatatatatatatatatatatatatatatatatatatatatatatatataaaattggtCTCAACATTCAACAAGTACTGTATGTTATTCATCAGTTTTAGCTTAAAtaacacagagaaaacaaccTTCAGTAACACTGTTACCTACAGAAATGACATGTGATGGGTTGCATGTGGTATAAAAGGGATGAATGTGATACTGAAGTAGTATATGATAGtggaaagctttatttttttattttgtttcaagtCCCAAGGTGGACTGCTTTGGAAGAGGCACTTTGAATTTGTGGTGCTCTCTTGATAAGAGCACAAAGGCCTGAGAATGGTAAACGAAAACAGTGAAACACTTCAAAGTTGTGTGGCCGTTAACGTTTGTTTTGACGGTCTTTTGAAGAATGTCACATTAGGATCACTGTGGGTGCACAAGACTTCGATTCACTCTGTAGAAcggaatgtaaatgtaatgatgGGAAAAGCAATATCTTTCAGTGTCCACAAGGGATGTACATGTGCAGTTGTAGTGAAAGTGTCTTATATTGTGATGAATGAGAATGTTGAAGTGTTATAAGTCTTTatcacatgtatgtatgtatgaatgtatgattatttatagatatagatatacaggtATACCTCGCTTTGAACGAGAGAGAGTTTCAAGATCAATTCGTGCTAAACGGggtcataaatataaatatatatttatataatttcatgacattttagttttaatccACAGAGGTTCCTAATTGATGCTTTTTCACTTGATTTTAACTTTCACTTCCAGCATGTTTTGGGcccttaattattattatatattattttttaaagtttatttcttaaaaaaataaataataataacaataattaagcTACACGGATTTCTGCTGTTTTCAACACTTGATTcaagtgtgggggggggttagtCTGACTGCAGTTAAGGAGCATGCGCTTTGTTTTTACACACTGGattcaaatatgaattaaattactGAATATGAACTCAACATGTATTGAACAGCTATGCCATCTATCTATGCAAGCGAGTGTTGCATTTCAATTTTGATAAcgtttgatattttaatgatttttaagatgtaattttgaaattaattaggGCAATACATTCATGCTATGATGAATCCATGCATAGAGCAGTCATGCAAAGCGGGGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110362 True 3022 lncRNA 0.36 1 29838518 29841539

Neighbor

gene id symbol gene type direction distance location
AMCG00021783 dtnbp1b,LOC108272579 coding downstream 175631 29648775 ~ 29662887 (-)
AMCG00021780 NA coding downstream 435813 29386827 ~ 29402705 (-)
AMCG00021778 pard6g coding downstream 463849 29365896 ~ 29374669 (-)
AMCG00021777 pard6g,pard6gb,LOC107731577,LOC105910269,LOC106570232,LOC106588584 coding downstream 506373 29327998 ~ 29332145 (-)
AMCG00021776 NA coding downstream 516887 29318323 ~ 29321631 (-)
AMCG00021787 NA coding upstream 825 29842364 ~ 29846378 (-)
AMCG00021786 LOC106597666 coding upstream 133447 29974986 ~ 29986193 (-)
AMCG00021789 LOC105890378 coding upstream 201340 30042879 ~ 30045102 (-)
AMCG00021788 NA coding upstream 205791 30047330 ~ 30048871 (-)
AMCG00021793 NA coding upstream 300683 30142222 ~ 30158707 (-)
G88347 NA non-coding downstream 557645 29279361 ~ 29280873 (-)
G88245 NA non-coding downstream 1007294 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 1026553 28811763 ~ 28811965 (-)
G88243 zfat,LOC107723386 non-coding downstream 1052857 28785166 ~ 28785661 (-)
G88241 NA non-coding downstream 1058808 28779343 ~ 28779710 (-)
G88435 NA non-coding upstream 46906 29888445 ~ 29947540 (-)
G88545 NA non-coding upstream 583765 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 684207 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 1120164 30961703 ~ 30962096 (-)
G88736 NA non-coding upstream 1957213 31798752 ~ 31836239 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 95710 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 766758 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 1055237 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 2918674 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 3120010 26674078 ~ 26718508 (-)
G88527 NA other upstream 496044 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 1036309 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 1288044 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 2221846 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 4418465 34260004 ~ 34356907 (-)

Expression


Co-expression Network