G88435


Basic Information

Item Value
gene id G88435
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29888445 ~ 29947540 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110368
CTTCTGAGTTGCTTCCCTAAAAATAGATCACCTAAAATAAGCAATTTGGTACatgcatttgcaaaaacacccaACCAGGCTTTTCACATGTTCATGACAGCTCCATTCTTCCATGCACAACTGCAATTGCAATATAAAGCGCATACATGTGCACCCCAGCCCTCATTTGTCATTTGCTGCACTATTGTCCCTCCTAGGAATAAAACAGCAAAGTTTGCTTTAGCACCCAGCAGGAGAGGAACTTCATTAACGGCTTGGGCTTGATCCGTGTGGACAAGCCGCAGTTGTCAGCACGACGACATCAACaacagctacaaaaaaaaacccaaccccccccccacaaaataacaaaaagaaaaagctccAGGTGTGAAGGAGTTAAGCCCGGCTGTAACTTCGTGTGGTGTGGGTATGCCTTAATCCGTGACTCTTGGAGGCTTGCCAGCGAGTTGCCTTGCCTCCATCCCCTTCTTGCATAGTGTTGTAGGATCCTTGAGCTATTGCAGAGGCGGCCAACTGCTCCATATTTGGCTTCTCTTACAcattcacagagagagagagagagagagggagagagagagggaggagggaggtggGAAGAGCCAGCGAGCTTTGCTGCAGACATCACTCTAGTAGCGGAGGGGAGACGGACCGCTCGTCCCTGCAGGAAAGAGAGCCCTGGCAGCGGGAAAAGCCACCGCTGTCTCAGCCGTCGCACCGCACAGGAATGGTGAAAGCTCCCAGAGGATTCAGGACTTGGATAATAAGAACCAGAATTGCAGACGACCCCTTCAGATTTCCATTGAGGAGGCTGAGACGAAACACTGATTGTGCAACAGATTGGAAACCTTTCTTCAAATGAGATCCTATATATGTCCAAGACCTTGATTTTTTTAAGGTTTCCAATGAAGCTGGGACTCGGCACTTCTGTCAGATGTACTGAGCCATGATTCACCCAAACTAGAATGAAATAGTATGAAGAGGTCATGGCTTTCACAGACAGCTTCAGGTTTCTTGCACACTGTTCTTATTTGGAAGGGGACACGGATTTTCATCTTACAACAGGATTGCTTTGTTAAAGTCCCTCCCCTTTCTATTGACTGCCTGTTTGAAAATGGGACATGGTTAATGTTCTTTTTTCAAAacgtatctgtctgtctatctacctgttgtctatctatctatctatctatctatctgtcttaaaaaaacactgtaggaatgttattgttttttgtgaataAAGATATCAAATGTCTtttcaaatgtgatttttgctttcctttcccCACATCCTCCCCACATTACATAGTAATGATACTCTCTGGAAGATATTTTTCCAATGGTCAGAGCTTTATATGTATCTTTCCTACAAGCTGAAAGAAAATCATTACATGACCTTTACACATGAGAAAAAGTGCGACTTTGTTAATGTCAGAACGCTTCCATATGTCTAGTAGAACTTGAAAATGTCACTGCTGAGGCCCTCCT

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU110368 True 1491 lncRNA 0.44 4 29888445 29947540

Neighbor

gene id symbol gene type direction distance location
AMCG00021787 NA coding downstream 42067 29842364 ~ 29846378 (-)
AMCG00021783 dtnbp1b,LOC108272579 coding downstream 225558 29648775 ~ 29662887 (-)
AMCG00021780 NA coding downstream 485740 29386827 ~ 29402705 (-)
AMCG00021778 pard6g coding downstream 513776 29365896 ~ 29374669 (-)
AMCG00021777 pard6g,pard6gb,LOC107731577,LOC105910269,LOC106570232,LOC106588584 coding downstream 556300 29327998 ~ 29332145 (-)
AMCG00021786 LOC106597666 coding upstream 27446 29974986 ~ 29986193 (-)
AMCG00021789 LOC105890378 coding upstream 95339 30042879 ~ 30045102 (-)
AMCG00021788 NA coding upstream 99790 30047330 ~ 30048871 (-)
AMCG00021793 NA coding upstream 194682 30142222 ~ 30158707 (-)
AMCG00021796 LOC105009370,LOC106588819,LOC100696657,LOC107596629,LOC102210154,LOC107685565 coding upstream 308491 30256031 ~ 30265454 (-)
G88434 NA non-coding downstream 46906 29838518 ~ 29841539 (-)
G88347 NA non-coding downstream 607572 29279361 ~ 29280873 (-)
G88245 NA non-coding downstream 1057221 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 1076480 28811763 ~ 28811965 (-)
G88243 zfat,LOC107723386 non-coding downstream 1102784 28785166 ~ 28785661 (-)
G88545 NA non-coding upstream 477764 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 578206 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 1014163 30961703 ~ 30962096 (-)
G88736 NA non-coding upstream 1851212 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 1911869 31859409 ~ 31859833 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 145637 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 816685 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 1105164 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 2968601 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 3169937 26674078 ~ 26718508 (-)
G88527 NA other upstream 390043 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 930308 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 1182043 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 2115845 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 4312464 34260004 ~ 34356907 (-)

Expression


Co-expression Network