G88440


Basic Information

Item Value
gene id G88440
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29975041 ~ 29978559 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110374
GGTTAAAAGGAGATAAATagcaaaatgtatgttttgggtACTTTCGCTATTACTACTTGTGACAGAAGAGCTATAAATTAGTAAATTACTAGGAAGACTATTTACATCATACAGATGACTAAAAGGTTCTGACATTTCCACACTTGACACCCTAGTCACAGTGATCTTAACCCCATTTACATGTTATGAGGTAAgcttgtatttcattaaaacataattgaaatcATGTTTATGGaaacacatacatacttttAAAGATGAGCAATTCATGCAACACACGTCATTAAGAGAGAACAGAAACACAGTTGTTACAATTTGCATTTCCTTTAATTGTTCATAGTGATAATTTAATTGAAcggcaattaaataatttaaacttttaaatctgaaatcctgaaaaagaaaaaagcatgagTGTCAGCAATTACCAATATTTTGATGTGCAGTCCATTTACATTGCAAATCCCAAAACATGTAGGAAGGCAAAAACATGTTGACAACACTTGCATCTTAGGTTTTGGAATAAAGAGCAGGGGAAGGTCAGCAAGATGCACTATGGCCTTGGACAGTGTATGTAATGCCCTAGCCTGCTTGCATATGTCACACTGCACCCTtcgtgtttatatataaaaaaagccaacattgtatgtatgtaaacaaGACCTCAGTCCATTTCTGAGCAAAGGAACAGTTGGGTTAAGTTACATCTACACAGCTGCCATACAAATATCACCTGAGCTAATGTCTTTGCTATGATTCAACAAGGGCGTCATTTATGGACTAGGAAATGGGCAGGAGTGTGGCGTATGAAGCAAAAATGTAGGAATTTCTTGCTTTTGGTGCGACAGTGGTCAACTAATGTGCAGCTCCCAAAGTTAAACTGATTTTGTAAAGTGTAGGGATGTGGAGACTCTACATTCTGACCATCACACTGGGAAGGTAAGGGAATCAGATTAATGTTCGTCTAAGGCTGCGAGATATTCTGCATTCAACgtacagcacaaacaaacagtgAGAGTGTGAACAAGACAACCACTTACTCTTCTACTTCAAATTCCCATAATTTCACAGATACCATGCTAACAAATTCACCTTGTCACAGTGGGGTTCTATACATCTGTAGGCCAAATCAGACTATTACTGACACCCAGCCTTTGTTGACTTTGTAATACACATTACTGCAAAGCATGCATTTTGGATACTATCATATGAGGCAAGTCCATATGAACGTTTCTTGACTATCCTTTCAATGCCTGCAGGGCTCAGAAGCACAGTCACAATGAGTACAAATGAAatcaggagaaaaataaatagaggaaTTTAATGGAAATACTGTAAGGCTGATAATTAGACTTCACACACTTATATACCGCTTTGTTACTATAAAGTtcttaagagaaaataaagcttttgaCTTATTTTTCACCCTAAAGTGTCTTCTGCCCAAATACTGCTGTAACGAATGTTACAGATTCCAAAGTCATACTTTTCTAGAGACATTTCATAGCTTTTTATAGAATTACATTGCCTTCAACTAAACAATCAAAGTCTGACTTGCGGAGAAATCTCATTAAAGCTAAAAGAGGAATttgataatgaaaatataacatCAAAAATGCTGTCTGAGTAATACAAGCATTGAAAATGAAGCACGCACAACTTAAATTCAATGAATGACTGCCACTTGGAAAGTCATTGTAAATCAGTGTTTCTGGGATAGGAGTGAAAATCAGTGAGTGGACAATAGAATTACCCAGGCTATTGAAAACACTTCTATACAGACATGCCAATACAATTGAAGACATGAATGTAGTACAATTTCTTTAATTTCAAACtacaaaaggaagaaaatagaAAGTCACGTATATGGAACAGTGTATTAAATGTTCTGATATGCTGATCATTATATTTGAGGCAATAAAGTTACATTTTAGGATTTTACATTGGAATATAATGCTAGTCATATGCATGCTAAAATTTGGGATATCACTCTTCTCTCGGGGGATATTGCTTCTGGTATTAAACAGTAACATGCCATTTCCCCTGTAATCTAGCTCTGTTACACTTGCATTTTCTCTATAATAAACATGgaatttcaaatcaaaatattagAAGCTGCCAATATAACAAAAAAGGATATGAAGTTTCCTAATGATGAGACAGGTATGACCAATCTTAAAACCACAGAGCTTTAAACCTAGCTTTTAACGACATTCAATGACTCCTTAAATCGctgaatataatttattgaGTTAGTTAGTTATGTTACAGGTTTAGCCCAATACCCAACTTAACGAAGAACCGAGATAAAACAAAAGTGGTATGTCAACCACAACTGGTTATCCCGTTCCATaacaatgtattactttttttttttaaatcaaatatcaaACTATTGGGGGTTGTAGAAATATAACTGGTAATTAAACTGGctactaataattatttaagagaaaaacaatggaTAAGAAATAGACTTCCTCAGAGCTCTGTTAGGTCACATGGTTTGTAGCTGCAGGCAAAGCGAAAAGCCCCTGGACATTTTAATAGTCTTCTTTGGGACCTTAAAGTAAAATACACTGTCTGAATCCTTTACACAGTTATGTTAAGCATTGCACCATGTAAAATTAGACTATTTAGGACATTATACGTTTTCAAACTgattgcaaaataaacataGCACTGCTACTGACAGCAATATGCCCTCCATATTCAATATGACAGGCTGATTggaaatgaatcaataaaacaagataaatacaACTATCATATCAGGGATACATACATATCTCACTGGAAAAACCTCAGACCATATATTATCTCTGTTATATATTGTAGTTACActtcagacatttttaatttaacaatcattttttcagattttccttTAAAACCTACTAATGCAGTTTTCTTTACACTCAATCACAATACAGCATTTTTCTGAAAAGTTCCTAATTAAATAACGGAAGCCAATTTCACCAAGGTTTTTCCCTGCATATAGAAACATGGGATAATCTATCACTTCTATTATTCTATACCCTCTGAATTGGATGGTGAAAACTCAAGAGTAGTGTTTTTTTCCCAGGATGTAAACTGGTTGTCCACTTCTTTTCAGAGCAGGCTTTGAAGGAATTGTAGAATTGGTATAGCTCTATTGTTAGGCACTCacattttggttcTACTGCATGAGATCACCTGTACGAAGTCAGGATTCCTTTCTGTTGGTTCTTCGCTCTTTCCTTCACCCTCTCTTCGGCTCCTGTGCCCGTACGGTATTCGGGTAATGTGAGAGACAGTTGTGTTCAAACAAGGTACCTACAGTAAACCTCACCATCATTGTGCACCGAGTCCAGAAGTATCATCTGGCTCCACTGCGTTTGACCACAATCGTGCCGGCTACAATGTCATACACAGTCCTGTTGTGCTGGAAGAACAGCAGGGTGATGAAGGCAGGGAAAAAGAAGGCAATGGAGAAATTTTTGTTCAGAGCTCTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110374 True 3496 lncRNA 0.36 2 29975041 29978559

Neighbor

gene id symbol gene type direction distance location
AMCG00021785 gmpr,LOC108425204,LOC108257268,LOC103024228 coding upstream 144644 29815490 ~ 29830397 (+)
AMCG00021784 LOC107677448,LOC106606150 coding upstream 170294 29788734 ~ 29804747 (+)
AMCG00021782 NA coding upstream 192471 29753411 ~ 29782570 (+)
AMCG00021781 NA coding upstream 326358 29606140 ~ 29648683 (+)
AMCG00021769 NA coding upstream 751729 29210277 ~ 29223312 (+)
AMCG00021790 NA coding downstream 98813 30077372 ~ 30091490 (+)
AMCG00021792 NA coding downstream 115310 30093869 ~ 30103130 (+)
AMCG00021791 znf704,LOC107696217,LOC107555575,LOC107702114,LOC107584255 coding downstream 140461 30119020 ~ 30126407 (+)
AMCG00021794 NA coding downstream 206761 30185320 ~ 30200518 (+)
AMCG00021795 hey1,LOC104947062,LOC107584259,LOC102780967 coding downstream 271524 30250083 ~ 30254353 (+)
G88403 NA non-coding upstream 249079 29725159 ~ 29725962 (+)
G88352 NA non-coding upstream 586440 29376521 ~ 29388601 (+)
G88308 NA non-coding upstream 659482 29307879 ~ 29315559 (+)
G88307 NA non-coding upstream 676961 29297837 ~ 29298080 (+)
G88306 NA non-coding upstream 694208 29279177 ~ 29280833 (+)
G88450 NA non-coding downstream 68569 30047128 ~ 30048888 (+)
G88454 NA non-coding downstream 158979 30137538 ~ 30139284 (+)
G88452 NA non-coding downstream 163636 30142195 ~ 30219496 (+)
G88485 NA non-coding downstream 277465 30256024 ~ 30258197 (+)
G88609 NA non-coding downstream 748725 30727284 ~ 30730868 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 589716 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 699694 29264827 ~ 29275347 (+)
G88276 NA other upstream 909702 29060887 ~ 29065339 (+)
G88238 NA other upstream 1196308 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 2337957 27632915 ~ 27637084 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 288843 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 471398 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 4947994 34926553 ~ 35077090 (+)
G89142 NA other downstream 5232574 35211133 ~ 35263537 (+)
G89299 NA other downstream 5986012 35964571 ~ 35967384 (+)

Expression


Co-expression Network