G88450


Basic Information

Item Value
gene id G88450
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30047128 ~ 30048888 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110389
CTCAGTAATGGAAACCTAATGTCAATATAATAAGTGTGGGAAGCTACACAGTTAACTGTATAGGCCTACATtgatcaaacttttttttaagaggaTGCATGTGGTTTTTCCTGTAAGAAATTTCCCCACAGTTATTTTCCAGAACAATAagtctgtatgtattttacaggttaaaaaagtaacacaaataaagtgtaactttgtcctttttttattcaaacaaaatattaacacattgttttatatacacataaataaatcagttgGAACGCCTTCTACTTCTTTGCTGCCTCTTTTGCTTGCGGGTCCTTTGCTATGCACAGAGCCTGAAGCGTGGAAAACATCTCTTTACTCGTTAGGTTGGCTCCTTTCATGACAAGTCTCTCTCCATCAAAAGGTAATGTCAATGACTGGATCTGATCGGTCGTGTTTCACATCTGTTATAAATTCACAGTTGGCATTTGTTGACCTGGCCTTTTCGGTCCCCACCATAGCAAGAAACTCCCTGTGGAGCGCACGTTAGCTTCGAAAGGACAGAACTGCACAAACACTTTCTTCACAGCTTTCAGCACCAGGGTCCCCTTGGACGCAGCCATTTTCGCACAGAAGGATTTAAC

Function

NR:

description
PREDICTED: cytochrome b-c1 complex subunit Rieske, mitochondrial

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110389 True 617 lncRNA 0.40 3 30047128 30048888

Neighbor

gene id symbol gene type direction distance location
AMCG00021785 gmpr,LOC108425204,LOC108257268,LOC103024228 coding upstream 216731 29815490 ~ 29830397 (+)
AMCG00021784 LOC107677448,LOC106606150 coding upstream 242381 29788734 ~ 29804747 (+)
AMCG00021782 NA coding upstream 264558 29753411 ~ 29782570 (+)
AMCG00021781 NA coding upstream 398445 29606140 ~ 29648683 (+)
AMCG00021769 NA coding upstream 823816 29210277 ~ 29223312 (+)
AMCG00021790 NA coding downstream 28484 30077372 ~ 30091490 (+)
AMCG00021792 NA coding downstream 44981 30093869 ~ 30103130 (+)
AMCG00021791 znf704,LOC107696217,LOC107555575,LOC107702114,LOC107584255 coding downstream 70132 30119020 ~ 30126407 (+)
AMCG00021794 NA coding downstream 136432 30185320 ~ 30200518 (+)
AMCG00021795 hey1,LOC104947062,LOC107584259,LOC102780967 coding downstream 201195 30250083 ~ 30254353 (+)
G88440 NA non-coding upstream 68569 29975041 ~ 29978559 (+)
G88403 NA non-coding upstream 321166 29725159 ~ 29725962 (+)
G88352 NA non-coding upstream 658527 29376521 ~ 29388601 (+)
G88308 NA non-coding upstream 731569 29307879 ~ 29315559 (+)
G88307 NA non-coding upstream 749048 29297837 ~ 29298080 (+)
G88454 NA non-coding downstream 88650 30137538 ~ 30139284 (+)
G88452 NA non-coding downstream 93307 30142195 ~ 30219496 (+)
G88485 NA non-coding downstream 207136 30256024 ~ 30258197 (+)
G88609 NA non-coding downstream 678396 30727284 ~ 30730868 (+)
G88655 NA non-coding downstream 998915 31047803 ~ 31048529 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 661803 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 771781 29264827 ~ 29275347 (+)
G88276 NA other upstream 981789 29060887 ~ 29065339 (+)
G88238 NA other upstream 1268395 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 2410044 27632915 ~ 27637084 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 218514 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 401069 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 4877665 34926553 ~ 35077090 (+)
G89142 NA other downstream 5162245 35211133 ~ 35263537 (+)
G89299 NA other downstream 5915683 35964571 ~ 35967384 (+)

Expression


Co-expression Network