G88454


Basic Information

Item Value
gene id G88454
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30137538 ~ 30139284 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110396
TAGAAAATCAGCCTctgagttaaataaatatatacacatttacacGAATCGgtaacaatgtgtgtgtgagggtgctGAACATGCTGTAGAACACAACTTTGTTCGTTGTATCGCAGGGAGTCCATTAATACCACAGCAAAGTTACCtgactgaaatgttttacagatgctttacattttattatgaagaTTTTGAGAAGGTATTTTTGCAAAAGTCTTCAGGGTGCACTCCACAAGCAAAAACAAGTCTGTATGCAACACTCAGTCAGCAATTGTAGAAAGTGTTGATTTACTGAATTgaaatctttgttttctgtgttttgctcAGACATATTGGTGTCTGTTTTGGTGTACAATGTGACGGTTTTGGTGAATTATTTGCTGTTCTTTTAACAACACTAAGACATCAGGATATGTATGgcatcaaataattaaattcaatgtcGTTTTTTGGCAGTTTAGTGAAGTTTTATATTTACTCTTTGAAAAGGGGACCTGGTAACACTTTCCAAGTAAAGACAATTCAGGCAGCATTTATGTGATTTTGGGGATATATGTAAATGATCATCATATGATCAGCTTCATTTGTTACAAGAATGTCTTCAGAACTTGAAGGAAGTGCCTAAGATTCTTATGTTGATCCTCTGATATTCAGTCAATGTGATTTTGGACTTGTTTTACTAGAGTGCAATACAGGGACACTATTGGCTGGTTTCAAATaacttgattagcactagtctaggaCTACTCGACTTAAACTAACACTAGGTAGGccatgactagtgctaatttAAGTCTGTGAAAGCAGCTCTAAAAGGTTTAGAAAATTAAGCTTTGAAACTGTAAGAGAAGGTCTGCTGGTTTCCCGTGACCGGGAATTTTGTCTGGGaagcaaaaagaaacacttaaatCAAACACTCAGCCTGAAAGAAAGGGGAAATCCGTAAAGATGACTGGCTtcacatatacaaaatatggTATTTGAtaagatatctatatatatatgtgacatTTTCTACAAAAAGTACCACATCTTATTCAGCTGTAGTGGTCTCCCGCTGAAGCTGTTTATTAATTGATGCTGACTGctgtttaattagttttctgGCTTCTCAAAATTCTGAAAACCAAAGTGATGTCTTCTGGACAAGCTTCCAACCACAGCTGGTTTACACAGCAGGGGTCACTTGAAAAAGCTTTGTTGATGCTATATTtgaaatggcttttttttttctcagtgtaTCTTGCAGAGATGTTTATGTTTCTGTAAAGCCACAGAGGTCTGGTTTATTGGTGCCAGAAGGGTCTAAATGCAAAGCGGTATAGAAAAAGTGAAGAGATTTATTTACCAAGTGAACATTGAATTGGtctatacaaaatgtatacatatatttatacatatataaactcTGTTTAAAGACACTTGCTGTACATGATGCACTTCATACATCTCACAATCTTCATTCATTCCTCTCCTGTTACACCTTTTCACATTACAATATTGTGAATTTCCAATAGAAACAAAGGCAACTGGTGACTGTTAACTTTCACTTTGCTGGCTGTACTAgttatttcaaacaaactgtATATAACTCTGGACATGGTGTTGTGTGATCTTGTGGTGATGTCCTTAAGGTGCTTGTAAGTACAACTGTTGTTCTTTGGTGTAAGATCTCTTCGTGAGACTTTTGTGTTACAATCTCATAATCAATcgctgagaaaaaataaatacttttggcAGCTGTTTA

Function

GO: NA

KEGG:

id description
ko04725 Cholinergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU110396 True 1747 lncRNA 0.36 1 30137538 30139284

Neighbor

gene id symbol gene type direction distance location
AMCG00021791 znf704,LOC107696217,LOC107555575,LOC107702114,LOC107584255 coding upstream 11131 30119020 ~ 30126407 (+)
AMCG00021792 NA coding upstream 34408 30093869 ~ 30103130 (+)
AMCG00021790 NA coding upstream 46048 30077372 ~ 30091490 (+)
AMCG00021785 gmpr,LOC108425204,LOC108257268,LOC103024228 coding upstream 307141 29815490 ~ 29830397 (+)
AMCG00021784 LOC107677448,LOC106606150 coding upstream 332791 29788734 ~ 29804747 (+)
AMCG00021794 NA coding downstream 46036 30185320 ~ 30200518 (+)
AMCG00021795 hey1,LOC104947062,LOC107584259,LOC102780967 coding downstream 110799 30250083 ~ 30254353 (+)
AMCG00021799 si:dkeyp-120h9.1,LOC106570559,LOC105012503 coding downstream 151957 30291241 ~ 30299913 (+)
AMCG00021800 NA coding downstream 208540 30347824 ~ 30375199 (+)
AMCG00021798 NA coding downstream 240463 30379747 ~ 30381378 (+)
G88450 NA non-coding upstream 88650 30047128 ~ 30048888 (+)
G88440 NA non-coding upstream 158979 29975041 ~ 29978559 (+)
G88403 NA non-coding upstream 411576 29725159 ~ 29725962 (+)
G88352 NA non-coding upstream 748937 29376521 ~ 29388601 (+)
G88308 NA non-coding upstream 821979 29307879 ~ 29315559 (+)
G88452 NA non-coding downstream 2911 30142195 ~ 30219496 (+)
G88485 NA non-coding downstream 116740 30256024 ~ 30258197 (+)
G88609 NA non-coding downstream 588000 30727284 ~ 30730868 (+)
G88655 NA non-coding downstream 908519 31047803 ~ 31048529 (+)
G88666 NA non-coding downstream 991063 31130347 ~ 31132235 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 752213 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 862191 29264827 ~ 29275347 (+)
G88276 NA other upstream 1072199 29060887 ~ 29065339 (+)
G88238 NA other upstream 1358805 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 2500454 27632915 ~ 27637084 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 128118 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 310673 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 4787269 34926553 ~ 35077090 (+)
G89142 NA other downstream 5071849 35211133 ~ 35263537 (+)
G89299 NA other downstream 5825287 35964571 ~ 35967384 (+)

Expression


Co-expression Network