G88485


Basic Information

Item Value
gene id G88485
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30256024 ~ 30258197 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110430
TTTCCGTTCACAGAACCCCAAACCTTTATTCACCACAGCTTGCTCACAAAGATATATGGGGAAATAACACAAGAAGCAAGAAGATGCAGGCAGACAGAAATCTTCCAAGAACCGCAACAAATCCAAGAGAGAGTTAAGTGTGTTACAGATGTAATGGCTGGCATACATTCTCCATCTGGTTTCAAAAGGGCAAAAGCAACAACACATCTGGTCAGTCCCCCACCCCACCCGACCCCAccccataaacacacacaaacacgcacacgcacacacgcacagttAAAGGGGAGCTGCGGGAGATTGCACTGCTAACTTTTCATGTATCATGTCTGTACTTTTGCAGCTCAATATTCTTTCAGATGCATGTTTGGATGTGGGAAACCCTAAAGTGTACATACACTTCCTTCGCTTTCATTACATTCCTCTTGGTGTATCCctgttttgttgtaattaacaCTGCTAGTATATTCACAGAGGGTCTGCCTTCATAGAGGTTGCTAGCATCTCTTTGGCCTTTGTTACTCTCCAGCATCTTTTATCACACCATCGTTTTCTGCTTTTGAATTCACACAGGGCACCGTTTTGTTAAATCGCAAGAAAGGTTTTAAGCACAGACAAGAGTGGAGGGCAAGGTTATCTGACAGAGTGAGAAATCTCCACATCAACAACCTATTCTACTCAAGCAAATCCTTGTGTCTAAAGTGAGCAATGGATTGATAATTTCCATCACAGTGACAACCTGAAAGGTCAAAAGAGGCACATACAACCAATTTCTTCTAAAAGGTGGGACACAACTATCTGTTGTACACAGTGATGTATTGACTAGTGTTTCCTTtccttataatttatttcatacatttactttttaccTCTTCTTGAAATTGGATAAAATGGCAGAAAGGTTTTAAATAAGCCCTATTCCATTCCAACACTGTATCTCCCACACACGTCCAATTCCAAAAGGTAAGTATAGTTAAGAGGGGCCCCCATTGCCACAGAAATCGGAGAGTAAACCTAAAATAGTCACATTTGCTCTGCTTACTCTTTGTAAATTCATTTCTTCTAATCGGACACTTTTGTTTCCAGATTATTTGCAGTTTGGACAATACTGCTCAAAAGGGAAAACAGCAACACAGAGAGACCATTGAAAAAGCCAGCTGTGTGACATCGCAAACAGTAATTCCAACATTTGACTACTCTCCCGGATTTCTATTAATGCACATTTCCTAACCAAAAATGTCTCACATTATACACTGATGTCTTCAAAAACAGGACTGAAATGCATTCCCTAAAAGCAAAAGACAACAGTGGTCTTTAGCTCACACAAGAAGTCAATATAGAGGGTGGGGGGTTGCTGATAGTGTCAGCTGGAGAAGGGTGGGGTGGGGTCAGGTTTTAAGAGTAAGTCAGCTAATTAACCTCTCTCTATTGTGACTGGAGGGCAATAAACTCCCATGCTGTGCACCATTCTTTGAGTCGACACAGATACAGAGATAATCAGAGGACCAGACATCGGAAAGTCAGCAAAACTGGCAACTCACAACATCAAAGCCTGTTACAGTACATGTcagtttcaaataaaatcatactaataaaaataaatgcatacatacttacatacatacgtacgtaaaagaaaaaatagacaaTTGGACATCGCGAtactcttgtttttttgttttttttgtttttttgtttatacatatataacaaaaaaaggtATTTACAAAACAAGATCCATGTTCACTTTTTGTTCTACATCAAGCAAATCATTCGTCTGAAAGGAGTGCGTCACTTTTGATTATGCTGATAGTGTTGGAGCAGCGTCTCTTACCCTCTGGACGCCGGAGGCTCGTTGTCTTTGCAGTTCTAGCTGGGGAATGAGGTGAAGAATGGCGCCGTGCCTGTCTCATGCCGAGAGCTCTTCCCGCAGCTCTTTGTTCCTGCGCACCACGGCAGCGTGCCTCTCCTGGTAAGAGCACAGGCAGCGGTGAGACACCACAACATGCTCTGCTACCCTTAAAAGACTAGTGACTGCTAACACAATGGCTCAATATATCAACACAGTAAATGCTACAGTAAAAGGCAGCAAGgacagaaactttttttttttttttttttatgtggaacaaatatcacatttttggtttcttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110430 True 2154 lncRNA 0.41 2 30256024 30258197

Neighbor

gene id symbol gene type direction distance location
AMCG00021795 hey1,LOC104947062,LOC107584259,LOC102780967 coding upstream 1671 30250083 ~ 30254353 (+)
AMCG00021794 NA coding upstream 55506 30185320 ~ 30200518 (+)
AMCG00021791 znf704,LOC107696217,LOC107555575,LOC107702114,LOC107584255 coding upstream 129617 30119020 ~ 30126407 (+)
AMCG00021792 NA coding upstream 152894 30093869 ~ 30103130 (+)
AMCG00021790 NA coding upstream 164534 30077372 ~ 30091490 (+)
AMCG00021799 si:dkeyp-120h9.1,LOC106570559,LOC105012503 coding downstream 33044 30291241 ~ 30299913 (+)
AMCG00021800 NA coding downstream 89627 30347824 ~ 30375199 (+)
AMCG00021798 NA coding downstream 121550 30379747 ~ 30381378 (+)
AMCG00021804 NA coding downstream 150419 30408616 ~ 30432115 (+)
AMCG00021810 kcnv1 coding downstream 224379 30482576 ~ 30492325 (+)
G88452 NA non-coding upstream 36528 30142195 ~ 30219496 (+)
G88454 NA non-coding upstream 116740 30137538 ~ 30139284 (+)
G88450 NA non-coding upstream 207136 30047128 ~ 30048888 (+)
G88440 NA non-coding upstream 277465 29975041 ~ 29978559 (+)
G88403 NA non-coding upstream 530062 29725159 ~ 29725962 (+)
G88609 NA non-coding downstream 469087 30727284 ~ 30730868 (+)
G88655 NA non-coding downstream 789606 31047803 ~ 31048529 (+)
G88666 NA non-coding downstream 872150 31130347 ~ 31132235 (+)
G88677 LOC101154678 non-coding downstream 956112 31214309 ~ 31214669 (+)
G88741 NA non-coding downstream 1600638 31858835 ~ 31859037 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 870699 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 980677 29264827 ~ 29275347 (+)
G88276 NA other upstream 1190685 29060887 ~ 29065339 (+)
G88238 NA other upstream 1477291 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 2618940 27632915 ~ 27637084 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 9205 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 191760 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 4668356 34926553 ~ 35077090 (+)
G89142 NA other downstream 4952936 35211133 ~ 35263537 (+)
G89299 NA other downstream 5706374 35964571 ~ 35967384 (+)

Expression


Co-expression Network