G88609


Basic Information

Item Value
gene id G88609
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30727284 ~ 30730868 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110586
atccattaaAGACACTCAAAAACAAATGAGCAAAAAGCAGATTTATTCATGATAAAAAAgggttcattttttttgttacaaaaatTGTTTATTACACTTTCCCCCACTTTCATTTTtagaaatcaaatacatattattgcCTTTTGTAATACCATGACCATACATACCTTCCAATATGTATAAGTGATAAAATAAGTATTGTAAACCAGACTTATTCACTCATTTAACAGTTATTTTGAAACCACTGTCTTCCAATCCCATGACAGAAAGAATTTTTCACAGCAAAACAAAGGATAATAGACATACATTCGGAGgtctttacaaaaaacaaaacatagcaGAATGTAATACCTTTCTGTCACAGTGAAATTAATCGcaggaaatacaattataataaattacattcaaaatactGGTTAAAAAGTTATTCATACTTTACAGCTGATCACCCTACACAActctaaaaaaaatgtattacatcaTAAAAGAACAAGTTTTGTATTTGGACATGATTGCACAATTGTAAACTAAAATGGCCACATTCATTTTGAAGAGAGAGCTAAATTTTCTCAGCATTTTCTGAAAGaaccagaagaaaacaaaactttacaCATTTTTCCCAGTGATACATAAAACAATTCTGGAAAAAAGTTGAGCAAATCTATagcataaaaatatatgaacttTCGCTTTTATTCAACtgccaaatgtaattaattatacatgCAAAATTGGCAAAACATCAAAGTTAAACTGGGTAAAATCGACCTGAGTTTCTTTTTTGGGCAAACCATAATGCTGCAAACCTGAAATATGTATGggaaagtatttaattcatgttttaaattgcatacCTAATgggacaaaacaaacataaacctGATTTTATCAGTAccataaaataatcatgttacCATTAAACAAACTATACACTTCTTGCAATGAAAAATAGTTTTGCGAAATTTGAAGCGAGGGACATAGACAAATAACATCACGTTCAACAATTAAGCATAAACtgtataaaaagacaaaaactaatCAATGAACCTAGATCAGTCACACAGCTGTTACAATCCTATTGGTCTGTGTATTTAGGTATTATGATGCCAAGACCCAGATAAAGACTGACCCCTTCTTAACAGAACAACTCCACAAAAGGAGAGTTAAAAATTGCTGCATTGCCCTACAGCTGTGAATGGGATCAGATAACTACAGATAACAATTCCagactaacaaaaaaaaaaaaaaactatctgaACCCAACCTGGATCCACTCTGAAGGTCATTGCAGTGAATCTGCCCTACATCTTGATTTTTCTACTGATTTTCAATCTGTAGTAATGCACAAGGTGATACATACATGCAGTACAGGGTCCCACTGTCATATGATCTATgatgtagtatttatttaccAATTTATTCTACAAAGAAAGATACCTGACATGTACCACAGACCAGTGTGTCAATGTTCCATTCCCTACATTTGTTTGTACATCGCACTGTGAGAGAGAGGATGTGAATAATACTCTTGATAGTCCACCTGGTTCATTCTCCTAATTcaaaacaattcattttaatgctgTTCTCCAATGTGAACCACCATAAATAAAGATTATACTCTAGGTGTCCTACCCTCAGTAACTATGTAATACTAAAAACACTCAATCTGTTTAGTGAATCTGCTTCTTACAGCGCCACTGACTTATATTTGGAAAGTTTTTAGGTTTGCTTATTAGACCTTCACTACCAATTCAGCAATTGCAGTTAACTTATCTTTCTTAGGTAGTTAACACTGAAAACTGAAAGTAACAATCAAAGTGGAATAAACCTAAACTATTATCTTGTAGTAAGAGCCCTTGGAATGTAAATCCCTCATTACATAACCGCTTTTTGGGTTATTAAGGTGGTGTAGAACAGACCAGAAAGAGTTCAAATACTGTAACTGAATTCACACTAAAGAGACAGATCAATAAAGGCTCAAAGTCATTAAAAACTGCCCCGTAAATACAGAAAGCATTGAGAGATCAaagtttgatttgtttcaaCTTGGCTCAAAATCAGACCAATATTAAGCATGCTTGGAAGAGaccaaaatacaaatagatAGCTTTGAAATTTTTACCAGCATCAATGAAATATCTTGttcatattattcatttattttgataaatgcaatttgGTCAGAGGTCCTTGGCTTTCTTTTCAGAACCTTGGGACCTCTGTAGAATTTCTATTTGAAAGTCCTAAGTATCAATCTAATAGAATCGATAAGAATGTTTTAAGTACATCCAGGTTACTCAACTCAATGTTGAAGATGAAGAACAGGCAGGAATATGGCACATAATTAGAACATCTAAACGTGGATATTGTGAACATAGTATTTAAAAGTAGGAATTAAATATACACCATATGCCAATGTATCACTTGGTGTACCAACTATTTGCATCATTGCCCATTTCTAAGTATTGTACATACAGTGCTTTCCCAGAATAAGTATCTTGCCATATaggaaagtgatttttttttttcatacaaagGTTTCTAAATACATAcctaactaaataaaaatgcacagtcAATACAAGGTCGGTATGATTCTAAAGGTCAACCTGACCATGAGGATATTATTAATTCCTTACGGGATAAAGTGCCCAGAATGATCAAAAAGACAGCTGTGTCTTCCTCACCCAGTGTCTGCTAGAGCTAGTGTATACTGAAGGATAGCTTCTGaaaatactaattatatatatatatatatacagctctggaaaaaaattaagattcagaaatcaatgttaagtggtctcttcattttttccagagctgtatatacaattatatataaaagcttTCCTCATGTGAAAACACTTTGAACTTCACTTAGACATATTAACACTATATGGAATGTTTTTGTatgaaattcagtttaaaagtAAGTAAATGAGATACTGTGAAGGGTAACATTTCACACAGTCTCCTCCACTGCAAAATGAGTGTTTGGAGTCACAAGTAAAGCACACTGACCAGACAGTCGGAAAGCAGAATCTATTCCCATAAAGGCCACAATTGTTTCTCCAATTCGTGTTGCCTAGAGGCCCAAAGGAAAATGCATTCCTGGTTAAGAGTGGAGGGGAGACCTTTCACTATAGCATAATCTTCTGCTTTATGTTCCCATTTGTTGTTGAACAAACATCGTTTTCAAAATGCCACTGATCCATCTGCCCATCTCTTCAGTGTACACATTCCCagagaaaaattataaaaatattaagtaaatatcaGTAGGCTGCTCAGACATTCCTGACATTCAGTTATAAATACGTCTATAAAACAGTCTTCCAGGTATCACTCAGAATCGGAATCATTCTGCTTCTGCATGCCTTCAGTGAGGTCGCCTCCATAATTGAGCTCTGCATGGTTTAGGTTTCCATTCATTTCATTCAGGGGAAAGTAGGAGTAAATCTCACGCTTGTAAAGAGGTGATTTGGCAGAAATCTGGATCAGGTTGCCAACAGTGCTGGCTAGCAGCAGCAGGCCCAAGACAACTGTGATCGTAATCCAG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU110586 True 3562 lncRNA 0.34 2 30727284 30730868

Neighbor

gene id symbol gene type direction distance location
AMCG00021815 ints8,LOC107563206 coding upstream 27920 30679836 ~ 30699364 (+)
AMCG00021811 NA coding upstream 48877 30617919 ~ 30678407 (+)
AMCG00021813 NA coding upstream 154013 30569202 ~ 30573271 (+)
AMCG00021812 dpy19l4 coding upstream 165587 30527032 ~ 30561697 (+)
AMCG00021810 kcnv1 coding upstream 234959 30482576 ~ 30492325 (+)
AMCG00021814 LOC107600535 coding downstream 13736 30744604 ~ 30753264 (+)
AMCG00021824 plekhf2,LOC107666819,LOC107600513,LOC107668314 coding downstream 66372 30797240 ~ 30797989 (+)
AMCG00021822 NA coding downstream 132394 30863262 ~ 30877840 (+)
AMCG00021821 NA coding downstream 297578 31028446 ~ 31039072 (+)
AMCG00021825 pkhd1l1,LOC107656576 coding downstream 347316 31078184 ~ 31156314 (+)
G88485 NA non-coding upstream 469087 30256024 ~ 30258197 (+)
G88452 NA non-coding upstream 507788 30142195 ~ 30219496 (+)
G88454 NA non-coding upstream 588000 30137538 ~ 30139284 (+)
G88450 NA non-coding upstream 678396 30047128 ~ 30048888 (+)
G88440 NA non-coding upstream 748725 29975041 ~ 29978559 (+)
G88655 NA non-coding downstream 316935 31047803 ~ 31048529 (+)
G88666 NA non-coding downstream 399479 31130347 ~ 31132235 (+)
G88677 LOC101154678 non-coding downstream 483441 31214309 ~ 31214669 (+)
G88741 NA non-coding downstream 1127967 31858835 ~ 31859037 (+)
G88743 NA non-coding downstream 1129053 31859921 ~ 31860135 (+)
AMCG00021802 kdm1b other upstream 258364 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 319512 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 1341959 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 1451937 29264827 ~ 29275347 (+)
G88276 NA other upstream 1661945 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 4195685 34926553 ~ 35077090 (+)
G89142 NA other downstream 4480265 35211133 ~ 35263537 (+)
G89299 NA other downstream 5233703 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 5919364 36650232 ~ 36659244 (+)
G89578 NA other downstream 7390389 38121257 ~ 38151049 (+)

Expression


Co-expression Network