G88643


Basic Information

Item Value
gene id G88643
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30961703 ~ 30962096 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110628
aaaacagcagagtccttgacctcattcgggcgcttactcaagacgcatctcttccaacagcacttgtaatattagtcctctatccctgctagatagcacttcagcttattatgctcctcgcgttcttgttttcctccttgctccctttcccgtagccctcgtctgtaaccctacatcttgacagcacttagctttcaccgtccaggatgtaggaagtcacttactgtacttgtgtaaattgtaaattggaatttgtaaaatgtattattttgaattgctatgttttagctaagttgaatttgtagtgattgatgccttgtacttctctgtatttttgcacttatgttgtaagtcgccctggataagggcgtctgccaagaaaaataaataaata

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU110628 True 394 lncRNA 0.40 1 30961703 30962096

Neighbor

gene id symbol gene type direction distance location
AMCG00021819 NA coding downstream 192959 30767734 ~ 30768744 (-)
AMCG00021818 NA coding downstream 219928 30730655 ~ 30741775 (-)
AMCG00021816 NA coding downstream 242473 30708825 ~ 30719230 (-)
AMCG00021817 NA coding downstream 253980 30699349 ~ 30707723 (-)
AMCG00021809 NA coding downstream 442190 30519001 ~ 30519513 (-)
AMCG00021823 gdf6a coding upstream 38890 31000986 ~ 31028447 (-)
AMCG00021827 ebag9,LOC107666870,LOC107705161,LOC107600620 coding upstream 80435 31042531 ~ 31051184 (-)
AMCG00021829 NA coding upstream 95963 31058059 ~ 31093370 (-)
AMCG00021831 NA coding upstream 131312 31093408 ~ 31108646 (-)
AMCG00021826 NA coding upstream 259887 31221983 ~ 31225381 (-)
G88562 NA non-coding downstream 398903 30525746 ~ 30562800 (-)
G88545 NA non-coding downstream 536151 30425304 ~ 30425552 (-)
G88435 NA non-coding downstream 1014163 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 1120164 29838518 ~ 29841539 (-)
G88347 NA non-coding downstream 1680830 29279361 ~ 29280873 (-)
G88736 NA non-coding upstream 836656 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 897313 31859409 ~ 31859833 (-)
G88762 NA non-coding upstream 1026678 31988774 ~ 31989050 (-)
G88795 NA non-coding upstream 1132606 32094702 ~ 32094939 (-)
G88831 NA non-coding upstream 1730175 32692271 ~ 32692496 (-)
AMCG00021820 NA other downstream 73115 30877848 ~ 30888588 (-)
G88527 NA other downstream 537091 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 1218895 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 1889943 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 2178422 28781802 ~ 28783281 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 167487 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 1101289 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 3297908 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 3384892 34346988 ~ 34380295 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 3416605 34378701 ~ 34388010 (-)

Expression


Co-expression Network