G88736


Basic Information

Item Value
gene id G88736
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31798752 ~ 31836239 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110741
GTGTTCAAACTGAGTTCTTGAGCTGAATCCTTGAGGAAAAGACACAGTGACTTTTAGTTGAGGTGAGCCAATCCATACtattccacatttaatttattccacTACACATCTTAAGATACGTTTTATAAAAAGTATACAGAAAAAAGAAGCACTACattgcttaatttattaaactaaaaaggggaaaaaaggacaAAGCACTAATATGTATGCAACTTTTCACTGAGAAGCCAGTGCAGATGCTTTGGGAGGCcttgtatttcaaatacaaaatgaacacagattaaaaaaataataagagcaTATGCAAGAGCACCACATACATCATTTACTGGTATGTCTGAATCATTTTACTTACTTTTAATCAACAAAATaggtttgttgttttacaagtcatacattacaatattaaaacagatcACTTGTCTGAAtagataaatgtttattttgacaaatgtgATGTACTGAAATTAACATAGTAAGGCTCACCTGATGTGACACATTAgacttgtattgtattttttttttttaaacccacagATTCACAAAAGCATTACATTCATTCATAGGCACCCTGCAGCAGAGTTTGACATAAAATTGTGCAGCCTAAGAAGGCTTTGTTTGCATGCCAggttaatataaaacatcatAACCTAATAGAAATCATGCTGTAATGTCTCTCATggcaaaaatatacattttcaagttaATTTAAAGGAATGTGTAATGGTTCTTTTGTtatgcttttcatttattttattttattgagtaATGAGGAGAAAGTGCTTGAATTCTTTTCTCATTACACATTCTATAAATATTCTTGCAGATTATCCTTATGTTATACAGTATCTTCTTCCCAGAATCATGTCAACTTAGATGGGCCCTTTCAATCCGTCTACAGAATGTATGCCTGTCTGGCTTGAGTTTGATTGATATGGACATCTATTGACAAAACTGTTGATACGATTCAAAGACGAATGCTGTTGGCAAGATTAGGGAGGACCAAAGGAAGATTGCAGTTTGTATCCTGCCGAGCCGAAACACTTTTTGTGGAACCCGATCAATGTGGCATCTCAGATGATATCATCTTTCTGCGCCTTTATCTTTCCCAAGTTAACTTTCACTGCCTGCACCATTCATTAAGAGCACTGAATATCTTTCGGGTATATCTCATGCTTCAGCTGCTGctataagaaagaaagaaagccacTGAACAGTATCCATAAAGGTCTGGGATTTAAGAGTCAGAATAATTTTGCTTCCAATACCGACTCTTAAACAGCCAATGAGAGAAAATGGAATTGGACCCCCTGAAATCACATTTTGATACAGCTGCTGCTCAGAACAAGACCATGTTTctaatattcatatatttgaatttgCTGTATGAATCTctttcaatttccatttttatatacacttacatacataataatacctttttaaatgtacaataaactACTACTTTTCTTTTCGCTTGCAtttctttaacttttaaaatgcattgtgttgaTCAATATCCCTTTAGACATTTAGCATTAGCatagttcatgttttttttaggaTGCAcctaaataaactatttaaagtGCTAAACTCTTGTAGTCATGACCAGAAACATTCATGATAGACTGGTAGAAACAAGTGAAACAAATGTGTCAACATCTCAAGCATTAAATGTAATCCAATGTGATTTTAGATGAACATCTGACTGATCTATAACTGATTTTATGACTTATTGTAACTTATTATTtctacacatacagtatatagtaACACTAGCAAATAATACCTTTAGAAAAACAgtcaatatataataaatactttttaactGACATTTCCTATTTCTTATTCTTATAGATATTCATGTGTACTGTGCTAAAATGGTATTTGAAATCTAAAAATAGTAACAAGCAGCAAGAAGAGATAAGTGGAGTATTGTAGTAGTCTTACCCCATAAATAGAGCCAAATTACCTCAACGTTCATGGCACATTGCACATTCATTTGAATCATATGAATACAATGATGTGATCTGAGGCGCTTTTCTCCGCAGTAATACAGATTTACCAGTCCATTTAAGACATCGGGTCAGAGTCACAGTGAACTTTTCTAACACATATTGGTTCCAAGAAATGCTGGAGACTCAACATTGTTACCACACAGCGAGAGAaaaaattagaataaaataaaaaaaaaagaatccagGAACTTCAAGGAAATAAAACCTAaaagtgcaaacatttttttttgtcatcttaGCTGTGGACTGgaagaaaatgtatcaaaagAAAGGCAAATATACCTGATACAATGCAGGTCTAGACCTCAGTTTAACTATAGACCAGTATGTCTGACTGAGTGCTGTATGAAAACATCTATACCTGCTGAATACAGTGCTTACAGGGTATTTAAAGGAGATAGACGCATAAAGTGCTACGTTGAATTGGAGTACAGTGTACAAGTNNNNNNNNNNNNNNtttttttttttttttttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110741 True 2501 lncRNA 0.33 2 31798752 31836239

Neighbor

gene id symbol gene type direction distance location
AMCG00021828 LOC107600623,LOC107666844,LOC107551188,LOC105905365,LOC107705775 coding downstream 448384 31310586 ~ 31350368 (-)
AMCG00021826 NA coding downstream 573371 31221983 ~ 31225381 (-)
AMCG00021831 NA coding downstream 690106 31093408 ~ 31108646 (-)
AMCG00021829 NA coding downstream 705382 31058059 ~ 31093370 (-)
AMCG00021827 ebag9,LOC107666870,LOC107705161,LOC107600620 coding downstream 747568 31042531 ~ 31051184 (-)
AMCG00021848 med30,LOC107706236,LOC107754270 coding upstream 175203 32011442 ~ 32018134 (-)
AMCG00021847 NA coding upstream 195449 32031688 ~ 32037579 (-)
AMCG00021846 NA coding upstream 210871 32047110 ~ 32047584 (-)
AMCG00021845 NA coding upstream 259286 32095525 ~ 32097519 (-)
AMCG00021861 NA coding upstream 2170420 34006659 ~ 34014890 (-)
G88643 NA non-coding downstream 836656 30961703 ~ 30962096 (-)
G88562 NA non-coding downstream 1235952 30525746 ~ 30562800 (-)
G88545 NA non-coding downstream 1373200 30425304 ~ 30425552 (-)
G88435 NA non-coding downstream 1851212 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 1957213 29838518 ~ 29841539 (-)
G88742 NA non-coding upstream 23170 31859409 ~ 31859833 (-)
G88762 NA non-coding upstream 152535 31988774 ~ 31989050 (-)
G88795 NA non-coding upstream 258463 32094702 ~ 32094939 (-)
G88831 NA non-coding upstream 856032 32692271 ~ 32692496 (-)
G88866 NA non-coding upstream 1834228 33670467 ~ 33670919 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other downstream 666567 31129583 ~ 31132185 (-)
AMCG00021820 NA other downstream 910164 30877848 ~ 30888588 (-)
G88527 NA other downstream 1374140 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 2055944 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 2726992 29069201 ~ 29071760 (-)
AMCG00021849 NA other upstream 227146 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 2423765 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 2510749 34346988 ~ 34380295 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 2542462 34378701 ~ 34388010 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other upstream 3538777 35375016 ~ 35395771 (-)

Expression


Co-expression Network