G88776


Basic Information

Item Value
gene id G88776
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 32065283 ~ 32067407 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110786
CTAATATACTATGTTCTACctttacacaatattacaagggTAacacattacagtgaataaaatgtaGGCGTAAGAGAAGAATAGAATGGTCTAAATGTATAATCCAAAtgtcttaaatatataaagggATGTTGAAATGGTATGTGTTTTTAAGACCCTGAGGCATGATAAggtggttttattatttattttgccattatgCATCACTTACAAgcatttggattttgttttccatatgaaaatacatttgaacacaatACTGAGAACCAAGAGGAAAAGCACTGTGAGAAAATGTTAGTGGATTCTTGATTCTACTAGCATCCTAATGTTGTGCAATATACATGCTTAAGGCAACCTGAAAAGTTAACAAATTGGATGGTTTGGTTCAGCAGAagccacattttaatttagttttaattatcatttgtaACTGTTTCTCATTAATTTGGAATTTCAAATGATATGCCAGTTAACATTTGGTAGAGTAGATGGAAGATTGGTGAGTAGCATTCATTATcacttaattataattataaaatttgAATTGCCAattccttttttccattttttcacCCCAACTTGGAATTGCAAACAATAGGACTGGGCTCATCACTGCTGTGACTTTGGTACTGCTTCAAAAGCAATCTGACAAAGCATGCATCCTCCAATTGTCACAATGTCACAAAGTTATCCActatttttcacactgcatgCCCAgagtatgtatatgtatacagaaTGTGTACCATTTATCACACCATTCAAAGGATTTGATGCAAATGGAACAGATAATACACTGAATTAAACAGGCACCAGATCAGCCACCGGGGTTTCTCATGTTcagcaaaccaaaaacaaattgtcCCCTGAATAACACCCCCCCAAAGCAGTCATTGTGCAGTGTCATCTGGGAATTCCTTTCCAAGGCTAGCAATGACATAGGCTGCATTCAAGACCAGCTCATCCAACCTATAGCATACACTCAGAGCAAACAGGCAACCCCACCAGTTTCTTTTCACCACAAAAAATCTGTAACAAAGTTACTGTGGATTTATGCACAATAGATTAGATACTAGCCTCAGGGCTTCAGTGGGAATCGTACCAAAGTAATGAAGCAAGCCAACCCCCCCTTTCCATCTTAATCCCCCCCTAGTAAAACTCAAGGAAATGTAGAACTCCAAGTAGCTTCTTACCAAAGAAAGATTGTATAGCTTGAGGATCCTTtgaatacctttttttttttgcctgaaaTATCACATGAGGTTTGGAAATGTGCTTTGGAAGACTCTCAGAAATCTACACATTCAGTATCATTGACACAGAGTGGGCAGGGCAAATGTTTGAAGCAGATACAATGCCAACTTTCAAAGTTGGCAGGATTTTTTATCAAAAGTAATGCACAGCAAGCAATATGCTATTAATACAGGTTTTCTATTAATATATTCACAGTGTGTAAAATGTGAGCTCaagtaaattgttttttttgacATTTGTCTCAATTTTGGACTTTGTTTCTGAaaacctgaatccaactgattACATTCCCCACCATATACAGTATGTGGTTATCCCACATTCCCCAAATGACTGAATGACAGCCTATGCTATATATTCCatgtgttacattttcaaagtacaTTAACCACTATGTCCCTAACAACATTTTTATGCATTGTTCAGTTGGAGTTTCTAGGATAAGTCAGTGCTTACAGATAATGTTAAACATTCATACCCGGCAGTGAACTTTAGTCTATTTTCTGGAGTTAGAAAATACACAgcagtacatttttttcccaaaaagCAGAACATCCGTTAAATGTTTGAGGATCTCCTGAGGTGCATTGCAGTAAATTATACTAGTCTTTTCATCATTATTCAGTTAAAGATCACCTAACTGCAGCAACTGAACAACTGGCTTCTTCGTGAATCTGTACAAGAGACTGCCTCTCCTTTGCTTGATTAAAAGGGAAAGGATGATTGAAGACCACTGTGATTAGCTGTGacgttttctttcttctccagACTCGACGCTTCGTTTTCTCTCCGTAGTCTCTGGATTTCACTGTTTATGTCCAGTAGTGTTTTGGCAAGCTGCCTGTCTT

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007399 nervous system development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110786 True 2102 lncRNA 0.37 2 32065283 32067407

Neighbor

gene id symbol gene type direction distance location
AMCG00021842 NA coding upstream 236 32059116 ~ 32065047 (+)
AMCG00021840 LOC108430552,LOC106928852,LOC106964918 coding upstream 84255 31954587 ~ 31981028 (+)
AMCG00021841 LOC101464589,LOC102196503,LOC102793765,LOC106588504 coding upstream 194258 31870072 ~ 31871025 (+)
AMCG00021837 samd12,LOC107592942 coding upstream 302280 31755353 ~ 31763003 (+)
AMCG00021834 NA coding upstream 354206 31704641 ~ 31711077 (+)
AMCG00021843 rad21,LOC108243945 coding downstream 14727 32082134 ~ 32092685 (+)
AMCG00021850 NA coding downstream 71165 32138572 ~ 32146026 (+)
AMCG00021844 eif3h coding downstream 125870 32193277 ~ 32219473 (+)
AMCG00021851 NA coding downstream 350894 32418301 ~ 32433938 (+)
AMCG00021852 NA coding downstream 432816 32500223 ~ 32508325 (+)
G88771 NA non-coding upstream 36117 32028958 ~ 32029166 (+)
G88761 NA non-coding upstream 76232 31988784 ~ 31989051 (+)
G88746 NA non-coding upstream 78753 31894467 ~ 31986530 (+)
G88743 NA non-coding upstream 205148 31859921 ~ 31860135 (+)
G88741 NA non-coding upstream 206246 31858835 ~ 31859037 (+)
G88833 NA non-coding downstream 737911 32805318 ~ 32805877 (+)
G88838 NA non-coding downstream 809992 32877399 ~ 32877672 (+)
G88867 NA non-coding downstream 1643367 33710774 ~ 33711053 (+)
G88872 NA non-coding downstream 1693836 33761243 ~ 33761474 (+)
G88882 NA non-coding downstream 1777689 33845096 ~ 33845340 (+)
AMCG00021802 kdm1b other upstream 1596363 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 1657511 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 2679958 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 2789936 29264827 ~ 29275347 (+)
G88276 NA other upstream 2999944 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 2859146 34926553 ~ 35077090 (+)
G89142 NA other downstream 3143726 35211133 ~ 35263537 (+)
G89299 NA other downstream 3897164 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 4582825 36650232 ~ 36659244 (+)
G89578 NA other downstream 6053850 38121257 ~ 38151049 (+)

Expression


Co-expression Network