G88833


Basic Information

Item Value
gene id G88833
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 32805318 ~ 32805877 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110850
gttgagttgatgccaaagagttggattttggtttcatctgaccacaacactttcacctagttctcctctgaatcattcagatgttggcaaacttcagacgggcctttacatgtgctttcttgagcagggggaccttcacggcatagtgtgttaccaattgttttcttggcgactatggtcccagctgccttgagatcattaacaagatcctcccgtgtagttctgggctgattcctcaccattctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttatttcgTGTTTATTCCATTTGCGAATTATTGCACCagctgttgtcaccttctcaccaagctgcttggcaatggtcttgtagcccattccagccttgtgtaggtctacagtcttgtccctgacatccttggacagctcttttgtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcctttatacaggtaacgatctgagattaggagcactccctttaagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110850 True 560 lncRNA 0.47 1 32805318 32805877

Neighbor

gene id symbol gene type direction distance location
AMCG00021852 NA coding upstream 296993 32500223 ~ 32508325 (+)
AMCG00021851 NA coding upstream 371380 32418301 ~ 32433938 (+)
AMCG00021844 eif3h coding upstream 585845 32193277 ~ 32219473 (+)
AMCG00021850 NA coding upstream 659292 32138572 ~ 32146026 (+)
AMCG00021843 rad21,LOC108243945 coding upstream 712633 32082134 ~ 32092685 (+)
AMCG00021853 NA coding downstream 189347 32995224 ~ 33300230 (+)
AMCG00021857 csmd3 coding downstream 576542 33382419 ~ 33395225 (+)
AMCG00021854 csmd3 coding downstream 629439 33435316 ~ 33453653 (+)
AMCG00021856 csmd3 coding downstream 669291 33475168 ~ 33537910 (+)
AMCG00021855 csmd3,LOC106570400 coding downstream 742719 33548596 ~ 33586500 (+)
G88776 NA non-coding upstream 737911 32065283 ~ 32067407 (+)
G88771 NA non-coding upstream 776152 32028958 ~ 32029166 (+)
G88761 NA non-coding upstream 816267 31988784 ~ 31989051 (+)
G88746 NA non-coding upstream 818788 31894467 ~ 31986530 (+)
G88743 NA non-coding upstream 945183 31859921 ~ 31860135 (+)
G88838 NA non-coding downstream 71522 32877399 ~ 32877672 (+)
G88867 NA non-coding downstream 904897 33710774 ~ 33711053 (+)
G88872 NA non-coding downstream 955366 33761243 ~ 33761474 (+)
G88882 NA non-coding downstream 1039219 33845096 ~ 33845340 (+)
G88884 NA non-coding downstream 1105543 33911420 ~ 33911775 (+)
AMCG00021802 kdm1b other upstream 2336398 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 2397546 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 3419993 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 3529971 29264827 ~ 29275347 (+)
G88276 NA other upstream 3739979 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 2120676 34926553 ~ 35077090 (+)
G89142 NA other downstream 2405256 35211133 ~ 35263537 (+)
G89299 NA other downstream 3158694 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 3844355 36650232 ~ 36659244 (+)
G89578 NA other downstream 5315380 38121257 ~ 38151049 (+)

Expression


Co-expression Network