G88838


Basic Information

Item Value
gene id G88838
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 32877399 ~ 32877672 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110855
AACACTTCACGAAAGAAGTTCGCCATGAACTCTGTTGGTCTCCCCTCCTCCATCCCCTCCGGAATTCCCACGACGCGTAGATTATTTCTCCTGCTCCGGTTCTCCAGGTCATCTATTTTCGCATGGAGCTTGTTATTTTCCGCACCAAGCAGATTGCAGGCTGACTCAAGGCCAGTAAGGCAACTGTCTAATGTGTTCATAGAGCCCTCCATCTCCCGGACTTTATCAGAACACTCGGACACCGCGGCTTTAATGGGAGCAATTATCGATTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110855 True 274 lncRNA 0.50 1 32877399 32877672

Neighbor

gene id symbol gene type direction distance location
AMCG00021852 NA coding upstream 369074 32500223 ~ 32508325 (+)
AMCG00021851 NA coding upstream 443461 32418301 ~ 32433938 (+)
AMCG00021844 eif3h coding upstream 657926 32193277 ~ 32219473 (+)
AMCG00021850 NA coding upstream 731373 32138572 ~ 32146026 (+)
AMCG00021843 rad21,LOC108243945 coding upstream 784714 32082134 ~ 32092685 (+)
AMCG00021853 NA coding downstream 117552 32995224 ~ 33300230 (+)
AMCG00021857 csmd3 coding downstream 504747 33382419 ~ 33395225 (+)
AMCG00021854 csmd3 coding downstream 557644 33435316 ~ 33453653 (+)
AMCG00021856 csmd3 coding downstream 597496 33475168 ~ 33537910 (+)
AMCG00021855 csmd3,LOC106570400 coding downstream 670924 33548596 ~ 33586500 (+)
G88833 NA non-coding upstream 71522 32805318 ~ 32805877 (+)
G88776 NA non-coding upstream 809992 32065283 ~ 32067407 (+)
G88771 NA non-coding upstream 848233 32028958 ~ 32029166 (+)
G88761 NA non-coding upstream 888348 31988784 ~ 31989051 (+)
G88746 NA non-coding upstream 890869 31894467 ~ 31986530 (+)
G88867 NA non-coding downstream 833102 33710774 ~ 33711053 (+)
G88872 NA non-coding downstream 883571 33761243 ~ 33761474 (+)
G88882 NA non-coding downstream 967424 33845096 ~ 33845340 (+)
G88884 NA non-coding downstream 1033748 33911420 ~ 33911775 (+)
G88887 NA non-coding downstream 1080923 33958595 ~ 33959180 (+)
AMCG00021802 kdm1b other upstream 2408479 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 2469627 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 3492074 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 3602052 29264827 ~ 29275347 (+)
G88276 NA other upstream 3812060 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 2048881 34926553 ~ 35077090 (+)
G89142 NA other downstream 2333461 35211133 ~ 35263537 (+)
G89299 NA other downstream 3086899 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 3772560 36650232 ~ 36659244 (+)
G89578 NA other downstream 5243585 38121257 ~ 38151049 (+)

Expression


Co-expression Network