G88882


Basic Information

Item Value
gene id G88882
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33845096 ~ 33845340 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110901
CTATCtcacaatgtgctgtcatggtttaaatcatatctgtcaaacagactccaatatgtacagattaacgagaaccactcaaatttaactgaggttaagtacggagtcccacagggctcagtcctcggacctatacttttttcattgtacatgctccctttaggtgatatcattcgacgacataatattaactttcacagttacgcagacgacacacaattatatctgtcagtaaatcctaacaa

Function

NR:

description
KDEL motif-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110901 True 245 lncRNA 0.38 1 33845096 33845340

Neighbor

gene id symbol gene type direction distance location
AMCG00021858 NA coding upstream 23010 33810474 ~ 33822086 (+)
AMCG00021855 csmd3,LOC106570400 coding upstream 258596 33548596 ~ 33586500 (+)
AMCG00021856 csmd3 coding upstream 307186 33475168 ~ 33537910 (+)
AMCG00021854 csmd3 coding upstream 391443 33435316 ~ 33453653 (+)
AMCG00021857 csmd3 coding upstream 449871 33382419 ~ 33395225 (+)
AMCG00021859 clptm1l coding downstream 429326 34274666 ~ 34286319 (+)
AMCG00021862 NA coding downstream 459609 34304949 ~ 34323922 (+)
AMCG00021869 NA coding downstream 561509 34406849 ~ 34413209 (+)
AMCG00021876 fhod3,LOC108413044,LOC102209662,LOC102799816 coding downstream 751576 34596916 ~ 34607621 (+)
AMCG00021873 fhod3 coding downstream 779708 34625048 ~ 34678756 (+)
G88872 NA non-coding upstream 83622 33761243 ~ 33761474 (+)
G88867 NA non-coding upstream 134043 33710774 ~ 33711053 (+)
G88838 NA non-coding upstream 967424 32877399 ~ 32877672 (+)
G88833 NA non-coding upstream 1039219 32805318 ~ 32805877 (+)
G88776 NA non-coding upstream 1777689 32065283 ~ 32067407 (+)
G88884 NA non-coding downstream 66080 33911420 ~ 33911775 (+)
G88887 NA non-coding downstream 113255 33958595 ~ 33959180 (+)
G88927 NA non-coding downstream 310081 34155421 ~ 34155966 (+)
G88937 NA non-coding downstream 331049 34176389 ~ 34176706 (+)
G88938 NA non-coding downstream 331614 34176954 ~ 34177478 (+)
AMCG00021802 kdm1b other upstream 3376176 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 3437324 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 4459771 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 4569749 29264827 ~ 29275347 (+)
G88276 NA other upstream 4779757 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 1081213 34926553 ~ 35077090 (+)
G89142 NA other downstream 1365793 35211133 ~ 35263537 (+)
G89299 NA other downstream 2119231 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 2804892 36650232 ~ 36659244 (+)
G89578 NA other downstream 4275917 38121257 ~ 38151049 (+)

Expression


Co-expression Network