G88887


Basic Information

Item Value
gene id G88887
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33958595 ~ 33959180 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110906
TTTTAACAGCAACAGTTCTTTACTGGCATATTATTACAGCTTGAGTCTTCAGTGCCAAAAGAGCAATGTGGccaaaatgaaatgctgaagTGAAAAGATATATAGCTGAAAATAATTAGTAACCTATACAGCATGTTTCTTGGATCAAATGTAGCTATTGGAAGTGATTTAGAAGAACGTCATTGTACAAATTAATGTATaccatatattttgtttactgatataaaatgaaatgggtttgtttaaaatagttaattttGACTAAGTATTGAGAGACCTTAGATATTTTTAATTGGTGTCCTATGCTAACTAGTTAATTCTAGGCCTTATGTGGggcagtacatttttttattctgttctgtAAATCACTACAAAATTTATTGACGGCTAGGTTTTAACTTCCATTGGATTGAAGTAGCTTTAACAGCATTAATTCAATCTAAAATTCCACAATACCAAGATAAAGTGCAAAGAAAAACTTCAATAAAGCAAACGAAAGGCTAATAACAGATTCAAAAAAGATGTGATTATATAAATTACTAAgcacatattattaataagacAAAGTATGTGAACCCTTTTGGAA

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110906 True 586 lncRNA 0.30 1 33958595 33959180

Neighbor

gene id symbol gene type direction distance location
AMCG00021858 NA coding upstream 136509 33810474 ~ 33822086 (+)
AMCG00021855 csmd3,LOC106570400 coding upstream 372095 33548596 ~ 33586500 (+)
AMCG00021856 csmd3 coding upstream 420685 33475168 ~ 33537910 (+)
AMCG00021854 csmd3 coding upstream 504942 33435316 ~ 33453653 (+)
AMCG00021857 csmd3 coding upstream 563370 33382419 ~ 33395225 (+)
AMCG00021859 clptm1l coding downstream 315486 34274666 ~ 34286319 (+)
AMCG00021862 NA coding downstream 345769 34304949 ~ 34323922 (+)
AMCG00021869 NA coding downstream 447669 34406849 ~ 34413209 (+)
AMCG00021876 fhod3,LOC108413044,LOC102209662,LOC102799816 coding downstream 637736 34596916 ~ 34607621 (+)
AMCG00021873 fhod3 coding downstream 665868 34625048 ~ 34678756 (+)
G88884 NA non-coding upstream 46820 33911420 ~ 33911775 (+)
G88882 NA non-coding upstream 113255 33845096 ~ 33845340 (+)
G88872 NA non-coding upstream 197121 33761243 ~ 33761474 (+)
G88867 NA non-coding upstream 247542 33710774 ~ 33711053 (+)
G88838 NA non-coding upstream 1080923 32877399 ~ 32877672 (+)
G88927 NA non-coding downstream 196241 34155421 ~ 34155966 (+)
G88937 NA non-coding downstream 217209 34176389 ~ 34176706 (+)
G88938 NA non-coding downstream 217774 34176954 ~ 34177478 (+)
G88980 NA non-coding downstream 410790 34369970 ~ 34373665 (+)
G88981 slc6a19b,LOC106570715,LOC107596751,LOC107743232,LOC107685553,LOC107662664 non-coding downstream 424779 34383959 ~ 34386202 (+)
AMCG00021802 kdm1b other upstream 3489675 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 3550823 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 4573270 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 4683248 29264827 ~ 29275347 (+)
G88276 NA other upstream 4893256 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 967373 34926553 ~ 35077090 (+)
G89142 NA other downstream 1251953 35211133 ~ 35263537 (+)
G89299 NA other downstream 2005391 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 2691052 36650232 ~ 36659244 (+)
G89578 NA other downstream 4162077 38121257 ~ 38151049 (+)

Expression


Co-expression Network