G88938


Basic Information

Item Value
gene id G88938
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34176954 ~ 34177478 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110960
ATTTTGCctaatccttttatttttgaGCCGCGTTCACAGGTTCCGAATGTGTATATTGATGGATCAGCATACATTTGTAAGAACTCTGGTAGATTGCTAGCaggttttgcagttttgttccCCGAGTACACTATAAAATTTTCTTGTCCAGGACAATCGTCACAATATTCTGAATTGGCAGCTTTGCTAGAAACCCTTAGGATAACTGATGATTCTGCAGATATTTATACAGATAGTGCTTATGTTGTTACTGCATGTACCTTGCTACCTCTCTATGCCAAAAATAATTTCCGATCATCAGATGATCGTCCCTTGAAACATACTACCTTACTACAGCATATTTGGTCTTCTATTCAGTCAAGACCAGGCGaaattgctgttttgaaagttaAGGCCCATGTGAGAAAGGATCGTAGAGGTGAACATCATATCAGAAATGATGAAGCTGATCGGTGTGCTAAATTTGCTGCTAGACACTGTGGTCCGTGGCATTTGCCAGATCCATTGCCTACCAATGAAAATGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110960 True 525 lncRNA 0.40 1 34176954 34177478

Neighbor

gene id symbol gene type direction distance location
AMCG00021858 NA coding upstream 354868 33810474 ~ 33822086 (+)
AMCG00021855 csmd3,LOC106570400 coding upstream 590454 33548596 ~ 33586500 (+)
AMCG00021856 csmd3 coding upstream 639044 33475168 ~ 33537910 (+)
AMCG00021854 csmd3 coding upstream 723301 33435316 ~ 33453653 (+)
AMCG00021857 csmd3 coding upstream 781729 33382419 ~ 33395225 (+)
AMCG00021859 clptm1l coding downstream 97188 34274666 ~ 34286319 (+)
AMCG00021862 NA coding downstream 127471 34304949 ~ 34323922 (+)
AMCG00021869 NA coding downstream 229371 34406849 ~ 34413209 (+)
AMCG00021876 fhod3,LOC108413044,LOC102209662,LOC102799816 coding downstream 419438 34596916 ~ 34607621 (+)
AMCG00021873 fhod3 coding downstream 447570 34625048 ~ 34678756 (+)
G88937 NA non-coding upstream 248 34176389 ~ 34176706 (+)
G88927 NA non-coding upstream 20988 34155421 ~ 34155966 (+)
G88887 NA non-coding upstream 217774 33958595 ~ 33959180 (+)
G88884 NA non-coding upstream 265179 33911420 ~ 33911775 (+)
G88882 NA non-coding upstream 331614 33845096 ~ 33845340 (+)
G88980 NA non-coding downstream 192492 34369970 ~ 34373665 (+)
G88981 slc6a19b,LOC106570715,LOC107596751,LOC107743232,LOC107685553,LOC107662664 non-coding downstream 206481 34383959 ~ 34386202 (+)
G89006 NA non-coding downstream 209776 34387254 ~ 34387672 (+)
G89010 NA non-coding downstream 242313 34419791 ~ 34420057 (+)
G89222 NA non-coding downstream 1229232 35406710 ~ 35406984 (+)
AMCG00021802 kdm1b other upstream 3708034 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 3769182 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 4791629 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 4901607 29264827 ~ 29275347 (+)
G88276 NA other upstream 5111615 29060887 ~ 29065339 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 749075 34926553 ~ 35077090 (+)
G89142 NA other downstream 1033655 35211133 ~ 35263537 (+)
G89299 NA other downstream 1787093 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 2472754 36650232 ~ 36659244 (+)
G89578 NA other downstream 3943779 38121257 ~ 38151049 (+)

Expression


Co-expression Network