G89142


Basic Information

Item Value
gene id G89142
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35211133 ~ 35263537 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU111226
CCACGCCAGCCCAAGACCTCCACATCTGGCTGCTTCATCTGCAGGATTGTTTGAGACCAGCCACATGGACagaaactgcacattttaatgtGGTCTTTTATAGTCCCAAGCATGAGGTGCACtggtgtaatgatcatgctgtttaatttgCTTCTTGATATgtcacacctgtcaggtggatggatgatcttggcaaaggagaaatgctgtCTAACAGGGATGTGAACAAATGTGTGCACAAAATTTGAGAGAATTTCTTTGTGCAAATGGAAAATtgctgggatctttcattttagttcatgaaacatgggaccaacactttatatgttgtgtttatgtttttgtccAGACACAGTCAAATAGGCTTTTTTCTCTTTACTGGTATCACAATGAAATATTATGGGttgaatgtatacatacattaaaaaaatctggtacttgcatttacaaatacatatattattttgaaatgcaacttAGGCAGACCATCATTAAATATGTTCTGATTTGCATatcacagaaatacattttccaacacATTGATAAGAGTCAGAtcgattttttgtttttgtttaattctgataACACACCCAATGGTCAGACTTTTACAGAATAGTTTACCAGAATATAGTTTTGTTACGGATTTATTCAATAAATCGCCACTCACTCACCCCCcaaaacgagcacgatgggtcgaatggccacGTCTCGTTTGtcaactttcttattttcttatatgTATGACAGAcccattttttaaaacatatctaCAGATAAAATGCCACCTAAAATTAGaatgacaaaatatatcaaGAAATGCCACTGTAAATTGGACTTACAAGTAgtccgcctggactactgcaactccctcctggctggcctgcctgcatctactacccgcccactccagctcatccagaactctgcgccctgtctggtattctctctgccacgattcgcacacgctactccactgctccgctccctccactggctcccgatagcggcacgcattcagttcaagacattgaccctcacctaccgctgtctcgaccacactgcaccaagctaccttcagacactcgtctctccatacatcccctgtaatattagtcctctatccctgctagatagcacttcacagtttttattatgcttctcgcgttcttgattgttttcatcGTTGCTCCCGGAGCCcctgtctgtgaccctacatcttgacagcacttagctttcactgtccaggatgtaggaagtcacttactgtacttgtgtaaattgtaaattggaatttgtaaaatgtattttgaattgctgttttagccaaactgaatttgtaatgattgatgccttgtacttctctgtatttttgcactttgtttgcgattatgttgtaagtcgccctggataagggcgtctgccaagaaataaaaataataataataataataataataataataataataataataataataaataatttataaaatgccCTCTTAGCTAAGGTGTCctgaagaaaattaataaatatcatAAGTAATGAATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111226 True 1553 TUCP 0.39 2 35211133 35263537

Neighbor

gene id symbol gene type direction distance location
AMCG00021880 NA coding upstream 35365 35108615 ~ 35175768 (+)
AMCG00021882 NA coding upstream 124629 35077101 ~ 35086504 (+)
AMCG00021883 NA coding upstream 228045 34981577 ~ 34983088 (+)
AMCG00021871 NA coding upstream 386457 34820340 ~ 34824676 (+)
AMCG00021872 NA coding upstream 474790 34718666 ~ 34736343 (+)
AMCG00021886 NA coding downstream 316422 35579959 ~ 35593338 (+)
AMCG00021894 NA coding downstream 601212 35864749 ~ 35887253 (+)
AMCG00021893 NA coding downstream 720518 35984055 ~ 36013655 (+)
AMCG00021899 LOC108426911,LOC108257397,LOC107601986,LOC107707114,LOC107677659,LOC107591967 coding downstream 1202249 36465786 ~ 36501828 (+)
AMCG00021911 NA coding downstream 2856787 38120324 ~ 38121572 (+)
G89010 NA non-coding upstream 791076 34419791 ~ 34420057 (+)
G89006 NA non-coding upstream 823461 34387254 ~ 34387672 (+)
G88981 slc6a19b,LOC106570715,LOC107596751,LOC107743232,LOC107685553,LOC107662664 non-coding upstream 824931 34383959 ~ 34386202 (+)
G88980 NA non-coding upstream 837468 34369970 ~ 34373665 (+)
G88938 NA non-coding upstream 1033655 34176954 ~ 34177478 (+)
G89222 NA non-coding downstream 143173 35406710 ~ 35406984 (+)
G89280 NA non-coding downstream 597379 35860916 ~ 36195602 (+)
G89283 NA non-coding downstream 628626 35892163 ~ 35893862 (+)
G89285 NA non-coding downstream 637106 35900643 ~ 35901176 (+)
G89298 NA non-coding downstream 700221 35963758 ~ 35970466 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other upstream 134043 34926553 ~ 35077090 (+)
AMCG00021802 kdm1b other upstream 4742213 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 4803361 30267402 ~ 30407772 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 5825808 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 5935786 29264827 ~ 29275347 (+)
G89299 NA other downstream 701034 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 1386695 36650232 ~ 36659244 (+)
G89578 NA other downstream 2857720 38121257 ~ 38151049 (+)
G89632 NA other downstream 3554335 38817872 ~ 38822685 (+)
G89728 NA other downstream 4136987 39400524 ~ 39408261 (+)

Expression


Co-expression Network