G89516 (atp9b,LOC104955405)


Basic Information

Item Value
gene id G89516
gene name atp9b,LOC104955405
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 37008474 ~ 37010542 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU111678
TCTTTTTACTGTTATCCACAGCAGAGTACCTCCTgtctttttatgattttgttatgctaaacatttttttttcttattgtagGTGGGACTGCTAGACCTGGAACTCAACAGCTTGACAAAGGCACTGTTTGTTGCTCAGGTGGTCCTCTCTGTGGTGATGGTGGCTTTGCAGGGGTTTGTAGGCCCTTGGTACCGGAATCTATTTCGCTTCATCCTGTTGTTCTCCTACATCATCCCTATCAGCTTACGTGTTAACCTGGACATGGGGAAAGCAGCCTATGGGTGGATGATAATGAAAGATGAAAACATTCCTGGTACAGTAGTACGCACCAGCACCATACCAGAAGAACTTGGACGATTAGTGTATTTGCTCACAGATAAAACAGG

Function

symbol description
atp9b Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in endocytosis; phospholipid translocation; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within phospholipid transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in endosome; plasma membrane; and trans-Golgi network. Orthologous to human ATP9B (ATPase phospholipid transporting 9B (putative)).

NR:

description
PREDICTED: cadherin-18-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111678 True 387 lncRNA 0.44 2 37008474 37010542

Neighbor

gene id symbol gene type direction distance location
AMCG00021899 LOC108426911,LOC108257397,LOC107601986,LOC107707114,LOC107677659,LOC107591967 coding upstream 506646 36465786 ~ 36501828 (+)
AMCG00021893 NA coding upstream 994819 35984055 ~ 36013655 (+)
AMCG00021894 NA coding upstream 1121221 35864749 ~ 35887253 (+)
AMCG00021886 NA coding upstream 1415136 35579959 ~ 35593338 (+)
AMCG00021884 NA coding upstream 1790343 35200245 ~ 35218131 (+)
AMCG00021911 NA coding downstream 1109782 38120324 ~ 38121572 (+)
AMCG00021910 NA coding downstream 1126580 38137122 ~ 38142159 (+)
AMCG00021912 NA coding downstream 1385264 38395806 ~ 38397674 (+)
AMCG00021914 NA coding downstream 1845284 38855826 ~ 38865619 (+)
AMCG00021915 NA coding downstream 2348176 39358718 ~ 39369622 (+)
G89480 NA non-coding upstream 153083 36848010 ~ 36855391 (+)
G89465 NA non-coding upstream 283083 36724112 ~ 36725391 (+)
G89448 NA non-coding upstream 392928 36595719 ~ 36615546 (+)
G89443 NA non-coding upstream 446061 36562007 ~ 36562413 (+)
G89430 NA non-coding upstream 496974 36511189 ~ 36511500 (+)
G89527 NA non-coding downstream 107010 37117552 ~ 37208252 (+)
G89538 NA non-coding downstream 248019 37258561 ~ 37258835 (+)
G89552 NA non-coding downstream 554432 37564974 ~ 37565215 (+)
G89554 NA non-coding downstream 591895 37602437 ~ 37602664 (+)
G89571 NA non-coding downstream 1006762 38017304 ~ 38059534 (+)
AMCG00021900 NA other upstream 349230 36650232 ~ 36659244 (+)
G89299 NA other upstream 1041090 35964571 ~ 35967384 (+)
G89142 NA other upstream 1744937 35211133 ~ 35263537 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other upstream 1931384 34926553 ~ 35077090 (+)
AMCG00021802 kdm1b other upstream 6539554 30449957 ~ 30468920 (+)
G89578 NA other downstream 1110715 38121257 ~ 38151049 (+)
G89632 NA other downstream 1807330 38817872 ~ 38822685 (+)
G89728 NA other downstream 2389982 39400524 ~ 39408261 (+)

Expression


Co-expression Network