G89579


Basic Information

Item Value
gene id G89579
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38158553 ~ 38161634 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU111749
ggCAGCAACCAAGACATCTCAATTGATCAGGACCAAGAGGGTGAGGAAGAAGAAAACCGGGAGCTGGACTTAGAGGAAGTGGTCCAGGAGTCTTCAAGCGACTGGCAATGTggaataacaaatgtatttcgATAGCATTTTGCCAAAGAAGCAGAGCACATCACCTGCATCTccatgtagtttattttctttctttttacaaacCTTGTCATACACACAAGTGTGGTTTCCTGTTATTCTCTCTTCTTCAGCAGGGTTTTCTCACAAATATTGTCAGGATGTTAAACAGGGCATGTATATCAGCATAGCAGTGTCCATTGTTGCCCTTTTGTAAAGGCAAGGATTTGATACTAGAACTAGGGGGAACTTGGTTAGTTTAACATTGATACCTcagcatttgtttgtgctggGGTGTGTGATAAATAAGCAGAATTTGAGTGATCTTTCTTCCTTTCCATAGAAATGAAATCTAGTTAGTGTCTCTCAGATGCAGTTtagtacatttcaaatttctATATTGAGAGATGGTCCATTTTAACTGGTACATTTCATCTATTGTATTGCCAAAGTATTGTCTGAAACTGGCTGTTGTCGGATATAATTTATCATCTTAATCCACTGCACAGAAGCAAGGCCACACTCTCGATCTGTCTGAACATATTCTGTTCCACCCATTAACAGCCAAACCAAGCCCTGCTCATAGTATTAAACAAATCATCAAAAATGTCTAGCAGGATGTTAAAGAAAGCCCAGAAAAAAATACCAATGcatttgtatgttaatgatGAACACTGAATTTGTCAGTGTTAATCCTGTTTTACAatggttattttattgtgaGAGCACTGGGAGACAGATTTTGCATTCTGTTGATAAGGGGAAAGTATTACAGAACTTACTTCCTACCACATCCTTTGTGCATGAGGTTGGAAGAAATGTTAGATTTTATTGTCTGGttctaataaaatatttctggaGCATCATTATGGTGCATTTCCGAACTACTTCTATCACTCATTTccctttatttaatgttaagcGCTTGAGTTACCATGGCAAGAATACTCTAAATGTGAACAACGGAGAATCATACCTAACACAAGCACCAGCATAGGTGGTGAAAccattagaaattaaattacagataATGGCAGATGATTTACTACTCCTTCAGTACCCTGACTTCAAACAAGCTGAGCTTATGAGTGCAAATCTCTCTAAGCACAAGCAAATTGCAGAGATGGGTGACAGTTGGCTATGTTTTGAGCTGATTCTCCTTGACGTTAAATCTGTTTTGTTCAGTCAaacattaacttttaaaattcaTTAGTAATTTAAGTTAAACCAGATATTTTCTAGCAAGGAAACTCAGCATTATGAATGCCTTTTGGGGGCAGTGATGCTTAGGCGAGACTAATgttccaaattatttttaatttgttcactTCATGTATCGTCTAGTCGCCATATTTCTCTGAAgtgacataaaatataaaagtcgGGTATCATATAGCAAAGTCATCTCTTAGTATCTGGATCTCAAGTAAACAATATAGCTACATAGCAGCCCTGCAGTATCAGCATCCTCTTTAGAATAGCTTGGAATTGTATCATATACTCCcccacacattattattattattattattatttttatttattggcagacgcccttatccagggcgacttacaacataagtgcaaaaatacagagatacacatacacacaaacacgacaaaactgttttttttttacttctgctTACCATAGAGTGCTTTGCCCATGGTTTTCTAGTAGGATTTAGGTAAAGGACTTCATTGAGcacattaatttaaatccaaACCCCCAGTTTCTGCACTCTATAACCACTTATTGAACATATATAGCAAAAATCACTTAAATTCTTTACAGTGCTATAGTATATATTTGCAACTGCTTGGGTTCCATGTGCTGTCAAGCCGTTGTCATATATAAATAGTGGGGTAATATTATGATAAGAACACATGTTTGGAGCCAGGAATGGGTCTTCACATTCTCATTATTTTCCAAGCAGCCATAGTGTTTGTCTTCTCATCTTATCGTTTAGCAACAGataattgtaaattaatgtCACTGTACACACATTTTTCTAAAGAACTTCCAGTTAGAAGAATAACACAATTTTAAAGCAGTACTTTAATATAGCCCAAACTTGATTTAATGTAACAATCCCAACTCTTAAttattaggaaaataaaaatattataataatgggTGGTGATCTTCAACATTATTTAAGAACTTACAAgtctatgaaaaaaataaattattaactcAGTCTAACCAAAAGATCAACATTAACATGTATTCTCTCCAGAAGCTGGAAATGTATCAATATTAATGCAAAAGGACATTTATTACAGTTGTGCAAGAAAGCTTGAACTCTTTCTACATTCACACAAAGCATCAATTAAGTAAACAGCTAgcaatttatttacaataaaccATCAAcacttctgttctgttttttaaggGTTCTTGTGAAATCTGGAAACAATAGTCTTATGCCTCAGTATTTGCTTTACAGAGGCATCTATATATTTAGCAAATATGAAAAGCTGTTACCACATAAATGTCAGATTTTTTAACTTTGAGGTTTGTCTCCCTCATATATATGTCCAgaaagttttatatatacacacacacacatatatatataatatagaatCATTTTGGTGACATTTGTCATTACGTTGGTATCTCAAGTGCTTTTTTGCAACCTGAGCTAAACATGACTGACATGAAGCTTtctttgaatacatttgttaagTAATGTGCAGAAtgtaaaaatgctgaaaatacCCTTAAAATGATGCCTTTTTCGAAGCTTATTAATGCCTTTCACTAACTCCTTTAATGCCCAATCATGGGACATGGTATTAATATGATtatcttaatattttgttttcataattttaaataattgttgactgtcagtttatttaaaagataCTGAATGCtatattgtttttctgaaatacatGTAGTCATGTTagctttactttaaaatgtatagtttaataTCTTAAATGTCTTATATga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111749 True 3082 lncRNA 0.34 1 38158553 38161634

Neighbor

gene id symbol gene type direction distance location
AMCG00021910 NA coding upstream 16394 38137122 ~ 38142159 (+)
AMCG00021911 NA coding upstream 36981 38120324 ~ 38121572 (+)
AMCG00021899 LOC108426911,LOC108257397,LOC107601986,LOC107707114,LOC107677659,LOC107591967 coding upstream 1656725 36465786 ~ 36501828 (+)
AMCG00021893 NA coding upstream 2144898 35984055 ~ 36013655 (+)
AMCG00021894 NA coding upstream 2271300 35864749 ~ 35887253 (+)
AMCG00021912 NA coding downstream 234172 38395806 ~ 38397674 (+)
AMCG00021914 NA coding downstream 694192 38855826 ~ 38865619 (+)
AMCG00021915 NA coding downstream 1197084 39358718 ~ 39369622 (+)
AMCG00021927 NA coding downstream 1298625 39460259 ~ 39461475 (+)
G89583 NA non-coding upstream 3421 38154835 ~ 38155132 (+)
G89571 NA non-coding upstream 99019 38017304 ~ 38059534 (+)
G89554 NA non-coding upstream 555889 37602437 ~ 37602664 (+)
G89552 NA non-coding upstream 593338 37564974 ~ 37565215 (+)
G89538 NA non-coding upstream 899718 37258561 ~ 37258835 (+)
G89597 znf236 non-coding downstream 87280 38248914 ~ 38250240 (+)
G89607 NA non-coding downstream 221058 38382692 ~ 38382955 (+)
G89608 NA non-coding downstream 257287 38418921 ~ 38419128 (+)
G89606 NA non-coding downstream 262776 38424410 ~ 38425293 (+)
G89619 NA non-coding downstream 266789 38428423 ~ 38429446 (+)
G89578 NA other upstream 7504 38121257 ~ 38151049 (+)
AMCG00021900 NA other upstream 1499309 36650232 ~ 36659244 (+)
G89299 NA other upstream 2191169 35964571 ~ 35967384 (+)
G89142 NA other upstream 2895016 35211133 ~ 35263537 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other upstream 3081463 34926553 ~ 35077090 (+)
G89632 NA other downstream 656238 38817872 ~ 38822685 (+)
G89728 NA other downstream 1238890 39400524 ~ 39408261 (+)

Expression


Co-expression Network