G89612


Basic Information

Item Value
gene id G89612
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38412047 ~ 38414262 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU111785
CTCCTGAGTAATCCCACAGattggattaaattaatgtgatgcatttgcatatttatcaaCAGCTCAAACTCTGTCAGGGGCCAAAAATCATAATGACAGGGAAACAGAATAAcactaaaatatattgcaaatcTGCCAGTCACCTGTTAGCCTTCTTGTCTAAATTGCTTTCATCATCTGTTCACACACAGCCTGTACAGCCAGTAACTCAACATATAGTTATTTTCATAGCTCTGTTGTCTgttattcaaaaataatttgggtttttcattgtaaaatggAATATTGGTAGTGTTCACAATTACATCTAAATTATAAATGTGCAAGTGTACAtacttttcaatgcattttaacaataatacattttcattatgccTCAGGTTCGGTTTATTTCAATCAGACATCCACAGTTCCTGCAggttttaaacaataaacatgCGTTAGGATTAGGGTGAGATTAAGGCTTTATGGTAGGATAGGGGCTATAGTTAAGGTTATGGTTAGTGTTGAGATTTTGTGTAGAGATGTATGGAGCCCCAGGTACACCTGGATGGTTTTTAAGAAATTTAGAAATTGTGTGATAAAATAACTGTTCAACCTTACCTGTCTGATCCAGCATGGGATTGTTGGAACCCCAGCGATGGTAGAGGGTGGCCAGGTCATGAGTGTTACAGTTCTTTAAGAAACCAAGGATGTCCACCGGTGTCTCTGGTCCATCAGAGAGCTGTTCCTGTTTGATGTGTATCTGTAGGGAGGGGGAGCCCGGTActatattgctatatatttgGGAGCCACTAAGACTACGACTGCCAGTGTTGTAGCTTTCCACAGTGTGGTGATCACTGCCCAGCTCTCGCTGAGTCATTACAGCTGGGGGCATCTCTTGCCTGCTTGGCTGCTCGCTTTTCACTGAGGATTGATATGAAGGAGGATGCAAAGCTGAAGCTTTGACCTTGGTATGCTCAAAGAGGCCATGCTTGTTGGAAAGCATAAACCCCAGCCCTTCCTGTGAAAACAGGTACTTCTCCATTGACCTGCCACCAGTTTTTGCATTCCCCAATGTCCTCTGAGGAGCCCCTACATTTTTCTCGAAGGCTCCCGCCGGTGCAACTTTTGGATAAATCTCCACCTTGGGCCTGGTGTGTGGTGGCTCGTCCTGCTTGCTGTAGTTTCCCTTGGGAttagtctgtttgttttttttaatattgtacagGCTTGAGACATTGGGGACTGCCTTATCAATTGTATAAGAGTCCCTGCCTTGGGAAGTACTGGGCTGACTTGAACAGGCAGCTGTGGCCTTTTCCTTTGGTGACTGAGAGTCGCTTTGCACTGGTGGCAAAGTGCGGGTGACTCTAGAAACTGGAATAGGCTGGCATTCCTTACCATCTAatgctggaggaggcccagtGCGTCTCCTGTGGCTCAAGGAGGCCGAAGTCTCTTTGGGGCCTTTAAAGCCATTTCTCTGTACCCACTTGGGAGCCATGTCATTGCAGCTTATCTTGTGTGAAATTCTTTGGTGCATCCATAGAACCTCAGGGTAACAGGTTGTGTGAGAACAGTATGAGCACTGGTGTTGGATCAAAGCGTTCTCCAGGGATGAGGTAGGAAGATCCTTCATGGCATTGTCACTGCCTGACCGAAGTCTAGAGTGCATGGATAGATTTAAAGGGGATGTGTAACTCTCATACTGTAGTCCAGTTTCTTTCTCACTTGCCAATAGTTTGACTTCATCAGCCTGAGACCTCTCTAAAAGTTGTGGGTCAGCACTGCTTCTGGACACAACCTGATCTGGGTTAGGATCAGTCACCATCTCTTCGAGGCATTTGTAGGTGTCCGAGAGCTTACAGGGTGGctgcagaattgtttttttcagtttgggATAACTGCCATAATTTCCATTCTTTCCCAAGTTTCCATTACTGTTGTTCTGTGGTAAAGACCCACTCACTGAATCCCTGCTGTCCATGTGTTGATCCTCCGTGTGGGACACCAGTAAGGAGGaatctgttgttttaaaatcacagtGGCTGCATGTATATGGCTTTCCATCTATAAGAGACATAAAGAATATGtaagcacatatatatataaaaccaaattgttacttaatatatttaaaaatatttctcaaaacaaaaacatttgaagagagCCCAAGGACATTCTAGTtcttttattcatattattcacatatttctgttttgggGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111785 True 2216 lncRNA 0.43 1 38412047 38414262

Neighbor

gene id symbol gene type direction distance location
AMCG00021908 NA coding downstream 167010 38238138 ~ 38245037 (-)
AMCG00021909 NA coding downstream 187443 38180080 ~ 38224604 (-)
AMCG00021907 galr1,LOC107373077,LOC102797365 coding downstream 453514 37957755 ~ 37958533 (-)
AMCG00021906 sall3,LOC103388658,LOC102796582,LOC103369140 coding downstream 1177206 37212616 ~ 37234841 (-)
AMCG00021905 NA coding downstream 1240668 37091198 ~ 37171379 (-)
AMCG00021913 tshz1,LOC107592027,LOC107748691,LOC107696938,LOC107593600 coding upstream 405149 38819411 ~ 38826295 (-)
AMCG00021921 NA coding upstream 524345 38938607 ~ 38945501 (-)
AMCG00021920 znf407,LOC106583495,LOC106605077 coding upstream 630523 39044785 ~ 39052673 (-)
AMCG00021919 NA coding upstream 776636 39190898 ~ 39192682 (-)
AMCG00021917 NA coding upstream 794753 39209015 ~ 39234436 (-)
G89609 NA non-coding downstream 62492 38349223 ~ 38349555 (-)
G89588 NA non-coding downstream 256926 38154760 ~ 38155121 (-)
G89587 NA non-coding downstream 258534 38153228 ~ 38153513 (-)
G89584 NA non-coding downstream 260997 38135260 ~ 38151050 (-)
G89570 NA non-coding downstream 431633 37980089 ~ 37980414 (-)
G89617 NA non-coding upstream 7471 38421733 ~ 38422676 (-)
G89618 NA non-coding upstream 8438 38422700 ~ 38425440 (-)
G89625 NA non-coding upstream 77073 38491335 ~ 38491585 (-)
G89630 NA non-coding upstream 229566 38643828 ~ 38644038 (-)
G89631 NA non-coding upstream 402682 38816944 ~ 38817150 (-)
G89611 NA other downstream 14292 38395571 ~ 38397755 (-)
G89598 NA other downstream 128192 38261387 ~ 38283855 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other downstream 1724405 36677106 ~ 36687642 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other downstream 1874329 36524509 ~ 36537718 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other downstream 1973697 36414879 ~ 36438350 (-)
AMCG00021918 cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275 other upstream 841617 39255879 ~ 39276056 (-)
G89765 NA other upstream 1071571 39485833 ~ 39486288 (-)
AMCG00021924 eppk1,LOC106938278,LOC107592034 other upstream 1072635 39486897 ~ 39548802 (-)

Expression


Co-expression Network