G89618


Basic Information

Item Value
gene id G89618
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38422700 ~ 38425440 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU111791
acatacacataaattGAGGGAATATTTAACAAAACTGGTAACGTAACAGCCAAGGAACGAGGCTGTAACTTTTGCCAcatgaaaacatgcaaaaaatttaaaatgaaaggctttGCAAAAACACTTGCTCAGTACGTAGGCAGTGGATTATTGAACACTTTAATGtggaaattacattacaatttgaacaatgtataaaacaacTGTTAAGAAgtgagaaatgttttgtttgaagaGGTAGAGAATTTCTCATTGGTAACAAGTCAGTGGATGGTTTCTAAGAATgttatgcaattaaaaaaactaaaaacattaaaacatttgattttgaaagttTGTCAAtaatgactgaaaataaatactacaaccaatcaaatacacattaaatactATTATCTATTTCAACAACTAAAATaacaatcaaatcaatacaatacTGCTCATAAGGGAACACACTAAACTCAAAAGTCTGAGAATAGACAGTTTCTTTGGGATGGCACCCTTTTCAGTTGccaaagacaaataaagaaagaatgtaaaaaaatgatcTGGGGCTGAATGGTTTTGTATGATTCCCACTTTTAGAAAGAGCTTCTGGAATCAAgtacacagagaaaacaaagataaatatttgcaatatCGTGTGTTATACTGTGCACCCATGTACATAATTCATAAGACAATGTAACAATTTTGTCTCACATGCCATAATGATcttttatagtattttatttaaacgaTTTCTTAATCACTTCTAAAATAGTCATGTTTTGGATGGAATTCAACACACACGTTGTACATTTCCCAACTTCGTGAGAGACATTAAGTACATACATTCGGTACAGTCACTTCTTAAGAGTATTCTCTAAGCTGCCTTTTAGTAAGATACATCCATAATAAACTGAGCAGGGAAAATCTACCAAATATTTGTATCCATAATATAACAGCATTCCAGAAATGGCTCTCCaatgaacaaaagaaagaaacaaacaaacaaacaaacaaaaaactattataTTTTCAAGTCAAATGTCCATCTCAGAAACAATATttgaagtaaatatatatatatatatatatatatatatatatatcttgttaGTGATACGTGCAAACTGGAATGTGGCTAAGCATTTACACGTTTAATTCCATACCACATGGGAAAACTAGTGACACCCccaaagttaaataaataataaagcaagaaATATATATCTATGTGCACCATTGTTTACCAACAACTTAATTTTGGTATTCGATGCTGTAAAGGGTTTTAGAAatttacaggagaataaaatCCTCCAGACATGTTTCTACTCAATCATCACATATCAAGTAAATAGTGAAGAGCAACTAGTGGAAACCTAAAGGTAATAAGATAttgtacaataatattaataaaacgaTAAAATTATATCATACTACTTATTAGGCAATATAAGTTTGCTACAAGCCAACCATTATTTATGtgtctctgtatttatatatatatatatatatatatatagtatgtgcACATGTGTAATCACTTGATACAGAAGTTTTAGATCTTTGTACATGTAAAAACTACCAgtgtctgaaaatatatatttatatatttgcatgcttggattttctttttttctgttttataaaatattatagaGTTACAAAAATCTAGCAATgctattacaaaaaaatctggtacatactctctctttcactctcagTCAAGGCAGCAGTAACTTTCTGTGATGCaataatttatgtttgtatgtgcaAATGCTGAAACCAGATAGTAGTTGACAACAACAGGTACAGGAACAGAGTAGAATAAGAAAACCCCAAAAGTAGCCTTATAATTGCATATACCAAATGGCTTTTTGTCCTAATGTGCCAGAGTCttgctaaattgaaataaaagctATTATTGCAAAGGAGGTATATGAAGCTTCTTGAAATAATCCAGTGGATTTTTAAGAATTAGGAATAAGAGTATAAAACCCAACAGTTAGGGATTGTAGAACCATAGTCACAAATTCCACATGTGATTTCATTTTCGGAGCTATTGTCAACAGAGTGCAAAGTTTCTGTCCATGTGTTCATCAGAATGCTGTTGGAACTTGCTCCCGGCACATTTTATTGCCACAATGCCATGTTGAGTTCTTACTGTGATAATAAAACCCTTCgatttttacattgtattcgttttttttcttcatgtattaTAGTAGTACCACCACACACTTTTTGTAAATACAGACAATGCAATCTAGCCCTGTGCAAGGCAAATCCTGAGGAAAAAATAGAAACCTTTCCTGTTAGTGTTCCACAGAcctttataaaacacttcaagatTGATTCTAGTTTTCTGCTAGTTCTGACGCAGCATTTAAGGATAAAAAATCCTCTGTAGCACAgcaaggtttgtttgttttttcagaaaaacaGTCCAGCTCGAAAGACAGCTGTAGTTCTTTATGCATTTGCCAGTGTCAAGGTTTTCAAGTTTAGTTCAATCCAAAACCAGTGGTGGCAAATGCCTCACAGCTGTCCATGTAAACCTGTGCCTTTCAAGGCTCTCAGTTAATGGttgcatttcattataattctgcagtgtgtgtggtgttCATCCATAAGTGAGGCAAACACAAGAGCTTTGCAATTAGTAAAACTTATAAATGgcagaaatcattaaaaaccaGTGCACCATTTCACAGTGTCGTCATTTGtcatcatatatacatacatctatatatatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111791 True 2741 lncRNA 0.32 1 38422700 38425440

Neighbor

gene id symbol gene type direction distance location
AMCG00021908 NA coding downstream 177663 38238138 ~ 38245037 (-)
AMCG00021909 NA coding downstream 198096 38180080 ~ 38224604 (-)
AMCG00021907 galr1,LOC107373077,LOC102797365 coding downstream 464167 37957755 ~ 37958533 (-)
AMCG00021906 sall3,LOC103388658,LOC102796582,LOC103369140 coding downstream 1187859 37212616 ~ 37234841 (-)
AMCG00021905 NA coding downstream 1251321 37091198 ~ 37171379 (-)
AMCG00021913 tshz1,LOC107592027,LOC107748691,LOC107696938,LOC107593600 coding upstream 393971 38819411 ~ 38826295 (-)
AMCG00021921 NA coding upstream 513167 38938607 ~ 38945501 (-)
AMCG00021920 znf407,LOC106583495,LOC106605077 coding upstream 619345 39044785 ~ 39052673 (-)
AMCG00021919 NA coding upstream 765458 39190898 ~ 39192682 (-)
AMCG00021917 NA coding upstream 783575 39209015 ~ 39234436 (-)
G89617 NA non-coding downstream 24 38421733 ~ 38422676 (-)
G89612 NA non-coding downstream 8438 38412047 ~ 38414262 (-)
G89609 NA non-coding downstream 73145 38349223 ~ 38349555 (-)
G89588 NA non-coding downstream 267579 38154760 ~ 38155121 (-)
G89587 NA non-coding downstream 269187 38153228 ~ 38153513 (-)
G89625 NA non-coding upstream 65895 38491335 ~ 38491585 (-)
G89630 NA non-coding upstream 218388 38643828 ~ 38644038 (-)
G89631 NA non-coding upstream 391504 38816944 ~ 38817150 (-)
G89657 NA non-coding upstream 514122 38939562 ~ 38939824 (-)
G89716 NA non-coding upstream 908485 39333925 ~ 39334125 (-)
G89611 NA other downstream 24945 38395571 ~ 38397755 (-)
G89598 NA other downstream 138845 38261387 ~ 38283855 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other downstream 1735058 36677106 ~ 36687642 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other downstream 1884982 36524509 ~ 36537718 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other downstream 1984350 36414879 ~ 36438350 (-)
AMCG00021918 cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275 other upstream 830439 39255879 ~ 39276056 (-)
G89765 NA other upstream 1060393 39485833 ~ 39486288 (-)
AMCG00021924 eppk1,LOC106938278,LOC107592034 other upstream 1061457 39486897 ~ 39548802 (-)

Expression


Co-expression Network