XLOC_000629 (gstcd)


Basic Information

Item Value
gene id XLOC_000629
gene name gstcd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 49951707 ~ 50065603 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001072
AATATCCGTTTATACTCGGACTGTTTTTAATGTGAGACCAACACAAGTTGCACATGTGCTGCTTCCCAGTGGATATTTTGCTCAATTCAAACAGCTGTCAAAATGAAGCAAACCGATCCTGAAACGCACAAGGAGAGCCTCTATCTGGAGGTGTGCGGAGCAAACGGAGCTGTTTCCCTCCCCCTGCACTCCTCCATCGTCCTCTTCCTCCTGTCCTACAGCGAATGCTCATCTTTTCACGTCTGCCTGGTCACAGATCAAGCAGACGTCCTGCAGTCCCCGTCAGCTCTGGTGCCCGCCGGTCTCTCTGTTTCTGCACTGAGGAGGGACGAGCTGCCAGGCCTGGTTAAGATGTGTCGTCTGCCGGCCGCTCTGGAGTCTGATGTCGGCTTTTGCCGAGCCGGCCTTGCTGTCGTGCTCAGACACATCATTCAGAGAGCATGCCAGTTGATGCCCGACCGCAGGGACGTGGCGTCACTTTTGGGCTTTAAAAACACCTGCCTCAAGGCTTGTGCTGAGGTTAGTCAGTGGACCAGACTTTGTGAGCTGGAAATTCCCTCTGCAGtagaaaaacatttacaaaacccTGAAGATGAGACGAATCGACTTCCTCCTGCAATTATAAACTTGGAAAAGAGGTTAGGGGAGCCTGTCAAAGTTCACAACGATGACAAGATACGTCGGCAGaagctacaacagcagaagaagaGCGATTCTCAAGTAAAAGATGCCGAAAAGGAACCCCATCCAAATGTTGAGCTCAGCGCTGCTCTGGCCAGGCTTTCTACAGATGCAGTTTGTCCTCCATCCAGCAGAGAGCACTCGGACATCAGGAAAGTCAAGAGCACTGATCTGCCAGAGCTGGAGCATGTGTTTGCTGAGGGCCTGTATTTCACTCTGACCGATGTCGTCCTGCTGCCCTGCATCCATCAATAcctggtaaaaacaaacaaatcgaAAGCAGTTTTCATCTCATTATGTATAAATCACTATTGCCCACTGAGAAATAGCCCGTTGCTCAGTTGTTTTAGCAGTAGAGGAGACCTTTTTTTAGGTTTCTTTTAGGTTCTGTCAAATATAGAAGCCTCTTATGCCTTTTTGACTTCTCTGACTTCAAGGTGATtctgctttaaagggatagttcacccttcAAAAACTCACCCTGTTTCCAAGCCTTCATGACATTGCTGCACGATATTaagaaaaaatctgacattgcagtaattgtttttttcttacatataagaatcctggaaatctgtaactattgacttccattgtactttcttcaaaatatcttattttgtgtctgatcagaataaagaaacaaaatatgactgcacaa
>TCONS_00001073
ATATCCGTTTATACTCGGACTGTTTTTAATGTGAGACCAACACAAGTTGCACATGTGCTGCTTCCCAGTGGATATTTTGCTCAATTCAAACAGCTGTCAAAATGAAGCAAACCGATCCTGAAACGCACAAGGAGAGCCTCTATCTGGAGGTGTGCGGAGCAAACGGAGCTGTTTCCCTCCCCCTGCACTCCTCCATCGTCCTCTTCCTCCTGTCCTACAGCGAATGCTCATCTTTTCACGTCTGCCTGGTCACAGATCAAGCAGACGTCCTGCAGTCCCCGTCAGCTCTGGTGCCCGCCGGTCTCTCTGTTTCTGCACTGAGGAGGGACGAGCTGCCAGGCCTGGTTAAGATGTGTCGTCTGCCGGCCGCTCTGGAGTCTGATGTCGGCTTTTGCCGAGCCGGCCTTGCTGTCGTGCTCAGACACATCATTCAGAGAGCATGCCAGTTGATGCCCGACCGCAGGGACGTGGCGTCACTTTTGGGCTTTAAAAACACCTGCCTCAAGGCTTGTGCTGAGGTTAGTCAGTGGACCAGACTTTGTGAGCTGGAAATTCCCTCTGCAGtagaaaaacatttacaaaacccTGAAGATGAGACGAATCGACTTCCTCCTGCAATTATAAACTTGGAAAAGAGGTTAGGGGAGCCTGTCAAAGTTCACAACGATGACAAGATACGTCGGCAGaagctacaacagcagaagaagaGCGATTCTCAAGTAAAAGATGCCGAAAAGGAACCCCATCCAAATGTTGAGCTCAGCGCTGCTCTGGCCAGGCTTTCTACAGATGCAGTTTGTCCTCCATCCAGCAGAGAGCACTCGGACATCAGGAAAGTCAAGAGCACTGATCTGCCAGAGCTGGAGCATGTGTTTGCTGAGGGCCTGTATTTCACTCTGACCGATGTCGTCCTGCTGCCCTGCATCCATCAATAcctgatctctctccGAACTCACTCTCCCTCCACGCTATCCCATCTGCCCTTACTGCTGAGATGGTACCAGCGCACACAGGAGCTCTCCGGTGTACTGAGAGCCGCAAAGGACTGTGGGATGGTCTTTCTTACCCTCAGTGCGGCCGACCCTTGTCTTACCCAGCAGGACGCCCCCCCACAAGCCAGCGAAGAGCCCAAACCAAAGCAAGAGCCCTTCATCGGGGGCCCGAGGCCAACACTCACCAAACTGCAGGAAAACGGGATAGATGCTATTTACTCTGCTTACCCTTGCCCTTTACGCACTGTTGATTGGGAGAGCCTACCGGCAGCCGTCAACCCCTCTGAAGGTAAGATGTCAGACAGCCGTGCGCTGCGCAAACAACAACAGCTCGACAACCTGCTGGCGATGGTGTTGAATCAGGCCCAGCCGGGACACACAGTGGTGGATTTCTGCAGCGGAGGGGGGCACGTTGGGATTGTTTTGGCCTACATGCTTCCTAAATGTCAGGTTATCCTTGTTGAAAATAAAGAGGAGTCTCTGATCAGGGCCAGAGAAAGAAGCGCTCAGCTCACATTGACAAACATCGGCTTCATCCAGACTAACCTGGACTATTTCACTGGAAACTTCAACATCGGAgtTGCTCTGCATGCGTGTGGAGTGGCGACAGACATGGTTTTGGATCGCTGTCTTCAGGCGCGGGCTGGGTTTGTGATCAGTCCTTGCTGCTACGGGTTCATTCAAAACACACTCAAGTTCAACTTCCCCAAGAGTGCGAGGTTTGCGGAGACTTTGAGTTATAAGGAGCATATGATCCTGTGCAGGTTTGCGGATCAGACGGCTGTCAGTTTACCACCCGAACGACGCTCCATCGGGAAGCGCTGTATGGGACTGGTGGACCTGGACCGCAGCTGGGCAGCAGAGGCTCATGGGTATTCTGTGAGGGTGATGACCATGATCCCAAAGGGATGTTCACCTAAGAACAATATGCTGGTTGGTGAACCGACAGGATAACACAAGCTCACTGAGAAATCCCTTTTTCAAGATGAGATAGGTCTACAAATATACCTCAGCGGGAATGTTTAAATgattatttccatttttttgtgtttcttttcaAGTTTTAACATGATTGATCAACTAaaaattcatcatttactcatgccAGTTTTGTTTAAGTGCTTTTTTATGAGCTATaaaaggagtatttttaaaataatgtttgcaATAGGAGTAAAACTTGGATTACATGGATTAAacttttttatgcaaaataa
>TCONS_00001074
GATTTTAAGCTCTTCATGTGTTCTGCCCTCATCTAGGCTGTCAAAATGAAGCAAACCGATCCTGAAACGCACAAGGAGAGCCTCTATCTGGAGGTGTGCGGAGCAAACGGAGCTGTTTCCCTCCCCCTGCACTCCTCCATCGTCCTCTTCCTCCTGTCCTACAGCGAATGCTCATCTTTTCACGTCTGCCTGGTCACAGATCAAGCAGACGTCCTGCAGTCCCCGTCAGCTCTGGTGCCCGCCGGTCTCTCTGTTTCTGCACTGAGGAGGGACGAGCTGCCAGGCCTGGTTAAGATGTGTCGTCTGCCGGCCGCTCTGGAGTCTGATGTCGGCTTTTGCCGAGCCGGCCTTGCTGTCGTGCTCAGACACATCATTCAGAGAGCATGCCAGTTGATGCCCGACCGCAGGGACGTGGCGTCACTTTTGGGCTTTAAAAACACCTGCCTCAAGGCTTGTGCTGAGGTTAGTCAGTGGACCAGACTTTGTGAGCTGGAAATTCCCTCTGCAGtagaaaaacatttacaaaacccTGAAGATGAGACGAATCGACTTCCTCCTGCAATTATAAACTTGGAAAAGAGGTTAGGGGAGCCTGTCAAAGTTCACAACGATGACAAGATACGTCGGCAGaagctacaacagcagaagaagaGCGATTCTCAAGTAAAAGATGCCGAAAAGGAACCCCATCCAAATGTTGAGCTCAGCGCTGCTCTGGCCAGGCTTTCTACAGATGCAGTTTGTCCTCCATCCAGCAGAGAGCACTCGGACATCAGGAAAGTCAAGAGCACTGATCTGCCAGAGCTGGAGCATGTGTTTGCTGAGGGCCTGTATTTCACTCTGACCGATGTCGTCCT

Function

symbol description
gstcd Predicted to be active in cytoplasm. Orthologous to human GSTCD (glutathione S-transferase C-terminal domain containing).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-41 Predicted to be active in cytoplasm. Orthologous to human GSTCD (glutathione S-transferase C-terminal domain containing).

Ensembl:

ensembl_id ENSDARG00000036494

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001072 False 1345 mRNA 0.46 3 49951707 49961195
TCONS_00001073 False 2209 mRNA 0.50 12 49951708 50065603
TCONS_00001074 True 857 mRNA 0.52 2 49955869 49960764

Neighbor

gene id symbol gene type direction distance location
XLOC_000628 NA coding upstream 28834 49920790 ~ 49922873 (+)
XLOC_000627 lef1 coding upstream 46350 49814461 ~ 49905357 (+)
XLOC_000626 NA coding upstream 176767 49699382 ~ 49774940 (+)
XLOC_000625 si:ch211-149l1.2 coding upstream 253597 49682312 ~ 49698110 (+)
XLOC_000624 tsga10 coding upstream 277701 49651012 ~ 49674006 (+)
XLOC_000630 npnta coding downstream 19837 50085440 ~ 50188006 (+)
XLOC_000631 aimp1a coding downstream 228335 50293938 ~ 50319654 (+)
XLOC_000632 NA coding downstream 323716 50389319 ~ 50392789 (+)
XLOC_000633 NA coding downstream 462531 50528134 ~ 50531694 (+)
XLOC_000634 pkd2 coding downstream 473236 50538839 ~ 50557030 (+)
XLOC_000623 BX321880.1 non-coding upstream 360884 49590701 ~ 49590823 (+)
XLOC_000616 NA non-coding upstream 699053 49244352 ~ 49252654 (+)
XLOC_000615 NA non-coding upstream 799700 49134464 ~ 49152007 (+)
XLOC_000637 NA non-coding downstream 667553 50733156 ~ 50808448 (+)
XLOC_000638 BX855617.1 non-coding downstream 788761 50854364 ~ 50854478 (+)
XLOC_000640 NA non-coding downstream 877989 50943592 ~ 50953558 (+)

Expression


Co-expression Network