XLOC_000631 (aimp1a)


Basic Information

Item Value
gene id XLOC_000631
gene name aimp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 50293938 ~ 50319654 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001080
AACGCGTGCGTGACCTGTTTCTCTCGCGCCAGATAGCAGCTGAACGACGCGTGACCGAGACGTCATCATCGCTCGCCGCCGCTGAGGGACGAGTGTGTGGCGTGTGGTATTATGGTATTATAGAAAAGAGTCACACGGTTTCAGTTTTATGTTCCTGGTACGTTCCCTTTTCAAGATGTCAGGCCACACACCCTCACTCATGAGACTGGAACAGAAGGCCGCGGAGGCCGAGCAGATCATCGAATACCTCAAGCAGCAGGTCCAGCTGCTGAAGGAGAAGGCTATTGTACAGGCCACACTAAAAGAAGAGAAGAAACTGATGGTGGAGAATGCCAAACTCAAGAAGGACATCGAGGAATTGAAGAAACAACTTCTTGACAAGGAAAAGATGAGAGGAGTGATTGACGTGCCTTCTACTGAGCTCAGTGTCCAGTGTGTGTCGAAACCCACGTCTGCAGATCCACCTGTCTCAGCATCCCCTTCTGCTGCCTCCTCAAAAACACCATCAGCCAAAAACAACGACGAGGCGAAAAAGATGAAAGCTGAGAAGAAGGGTGAGAAGAAAGAGAAGAAGGCAGCGGCGCCTCCTCAGGAAGATGCGAAGGTGGACGTGTCTCGACTGGATCTGCGAGTGGGCCGCATCATCAGTGCAGAGAAGCATCCTGACGCAGACTCGCTCTATGTGGAGCAGGTTGATGTGGGTGAAGCAGCTCCACGCACTGTGGTCAGCGGACTGGTCAAACACATCCCTCTGGACCAGATGCAGAATCGAATGGCTGTGCTCCTCTGCAACCTGAAGCCGGCTAAGATGAGAGGAGTTTTGTCCCAGGCCATGGTCATGTGTGCCAGCTCTCCGGAGAAGGTGGAAATCCTGGATCCCCCGAGTGGAGCAGCGGCTGGTGACAGGATCACCTTCCAGGGCTTCCCAGGTGAGCCTGACAAGGAGCTGAACCCCAAGAAGAAAGTGTGGGAGCAGGTCCAGCCAGACTTGCTCACCGATGATCAATGTGTGGCCACTTACAAGGGAGTTGCTTTTGAGGTCACTGGCAAAGGAGTGTGCAAAGCTCAGACAATGAGTAAGAGCGGCATCAAATAGGAAATCTCCCTCTGTGACAAAGCCTATTCTCTGACCTCTAGACCTCTCCAATTGTGCTGAATGAAGGGATTAATAAAGTCTTTGAATACTA

Function

symbol description
aimp1a Predicted to enable tRNA binding activity. Is expressed in somite. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 3. Orthologous to human AIMP1 (aminoacyl tRNA synthetase complex interacting multifunctional protein 1).

GO:

id name namespace
GO:0000049 tRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-144 Predicted to enable tRNA binding activity. Is expressed in somite. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 3. Orthologous to human AIMP1 (aminoacyl tRNA synthetase complex interacting multifunctional protein 1).

Ensembl:

ensembl_id ENSDARG00000060036

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001080 True 1187 mRNA 0.52 7 50293938 50319654

Neighbor

gene id symbol gene type direction distance location
XLOC_000630 npnta coding upstream 105932 50085440 ~ 50188006 (+)
XLOC_000629 gstcd coding upstream 228335 49951707 ~ 50065603 (+)
XLOC_000628 NA coding upstream 371065 49920790 ~ 49922873 (+)
XLOC_000627 lef1 coding upstream 388581 49814461 ~ 49905357 (+)
XLOC_000626 NA coding upstream 518998 49699382 ~ 49774940 (+)
XLOC_000632 NA coding downstream 69665 50389319 ~ 50392789 (+)
XLOC_000633 NA coding downstream 208480 50528134 ~ 50531694 (+)
XLOC_000634 pkd2 coding downstream 219185 50538839 ~ 50557030 (+)
XLOC_000635 si:ch73-190m4.1 coding downstream 294214 50613868 ~ 50637221 (+)
XLOC_000636 herc3 coding downstream 319762 50639416 ~ 50691538 (+)
XLOC_000623 BX321880.1 non-coding upstream 703115 49590701 ~ 49590823 (+)
XLOC_000616 NA non-coding upstream 1041284 49244352 ~ 49252654 (+)
XLOC_000615 NA non-coding upstream 1141931 49134464 ~ 49152007 (+)
XLOC_000637 NA non-coding downstream 413502 50733156 ~ 50808448 (+)
XLOC_000638 BX855617.1 non-coding downstream 534710 50854364 ~ 50854478 (+)
XLOC_000640 NA non-coding downstream 623938 50943592 ~ 50953558 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G416337 NA non-coding CI01000301 null 399897 ~ 412270 (-)
bowfin (Amia calva) AMCG00017924 aimp1,LOC107684278,LOC107675933,LOC107729369 coding CM030131.1 CM030131.1 29031879 ~ 29049397 (-)