XLOC_000635 (si:ch73-190m4.1)


Basic Information

Item Value
gene id XLOC_000635
gene name si:ch73-190m4.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 50613868 ~ 50637221 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001082
CAAACATTACTTTCATTTCGCGGGAAGTCATGATGTCCTGAGTCAGCAGTTTCGCTCTCAATTTCTCTTTATATTTTGACCAGCGTTCATTCAGCAGTCAATGGTTCAGAGAGACGCTGCTGAAGTCTGAACGTTTCATCCTAACGGTGAACATGTTGTGTTATTGGGGAGCGCAGGTCCGGGAAGGATTCGGTTTGTTAAAACCTGAGTTGGTCAGACATGGAAACTGTGGGATTAAATCCATCTGTCCGAAATCAGCTGTTCAGGACATGTCAGCTGGAAAGAGCTTCGTTGGATTCATCCGGGAAGGGAAGGTGTCGGTACTGAGACTGCGCGGTAAAGACAGTGACCAAGATGGAAAACTAAaacATTTGCAGCTAAAGAAAAACACAATCAGATTGATTGTCTGTGGTGAATATGGAGCGGTTCTTCTTGATGATGGAGGAAAAGTTCTTATTATGGACAAATCTACTGAGTGCAGTCCTCTTAAAGGTCTGGAGAACAGGCAGGTGATTCAGATCGCATGTGGAGACCAGCATTCAATGGCGCTAACCAACGATGGTCAGTTGTTTGTTTGGGGCGAGAACGCTCTTGGTCAGCTGGGTTTGAGGAAAGAGCAGGCCGGCACTCAGTCTCCTCGACACCTCCAGAGTCTGTGTGGGATCCCAGTGGCTCAGATCAGCGCTGGAGGAAACCACAGCTTTGTGTTGTCTCTGTCAGGAGTCGTGTTTGGGTGGGGGGGCAACTCTGCTGGACAGCTGGGTCTCGGAGACACTACAGACAGATTCGTCCCAACAGTTGTAAATAGTCTTAAACGAAAGAAGATTGTGTCCATCTCATGTGGAGGAGAACACACTGCAGCTCTAGCAAAGGGAGGAACAGTGTTCACATTTGGATCAGGAGGTTTCGGTCAGCTTGGGCACAACTCATTTAAAGATGAACATCATCCACGACTGGTTGCTGAACTGTGGGGATCTAAAGTGTCACAGGTCACATGTGGGAGAAATCACACACTTGTATCGACTGCATCACCAAAGCTGATCTACTCATTTGGATGTGGGATGCAAGGGCAGCTGGGAAATGGAGAACAGGTCAAGCAGTCTGTGCCGTTACCAGTAGACCAGCCAACTGAATATAATGACGAATATACAATTCAAAAACTTGTCGCGGGGGAGAATCATTCGTTTGCCTTGTATTTCAAAGAACTTGGAAATGAGGCTAATCCAGATCCAACCAGAGGGATTATGACATTTGATAACGGAATGATTGAACAATGCGAGTGTGGAAAAGATCCACGGAAAGCGATAAAGGACTTGAAAAAAGTGTTCTCCTCTGCTGCATCTCTAAATGGAAGTTTTCTCAAAACAAGGCATGATGGTCATTATCAGACGTCTGAAGAGTATTGTGGTTTGGATTTTGGTCTGGTTGAATCTTCCATTGCAACTTTATCAAGGAATGAAAGGCTTATCTCAACGGTTTTGAAAGTGCTCCAAGAGTCACTGTTGCCAACTCTAAATCCAAATCCAACTGGTGAGGAATCACTGAGACTCTATATTCTCCTGCCTGAGCTGATCAGCCATCTCAAGAGTGAACAAAAAGCAGAACTTACTGAAGCTCTGGCCTCCAAAATACTTAATCTAAGTCCTGCTGCTCTGAGAGTGTTAGAGATCTACTGGTCCAAACTCCCTGATGACTGGCTTAAAAACTTGGTTAAGTTATTCAAAAAGGCATCAGCTAAATTCTTTGGGAGGATCATTGTCGAGAACGTGAACAATGTGGCTAAAACACACATGCTAAAATTTGTGGAGATTCTTCAAAGGGTCTATCAGGTCTGCTGCAGCGCCAACAGAAATATCAAGAAGAGGTATTTCATCATTCATGAGGTCAACAATCTCCTAGATGTGCTACAAACTATGAATGCAGATGTTAATAACAACTGGCCTTGGTTTAACCTTACTGGACAAATCCATGCCCTGGAGGCACAACGAAATGCGTATGAAGAAACTTTTAGAAAGCTGACATCATTTCCATGCATCTTTAATCTGGAGGCCAAATGTAGCTATATGAGGAACAGAGTATGGAAGGGTCGTTTTGAGCTGACTGTGAGACGCACAGCACTGCTAGAGGATTGTTTATGTCTACTAAACCCAGGCACCCAACAGCATCTCAGAGATAAATGGCTGTCGATTCTTTTCACTGAGAACGTGAGCAAAAGAACAGACGTCCACAAGAGGGACTTCTTTCTCAACGTGTTTAAGGAGCTTTGTGATCCAGCTTCTCAGCTCTTCATGTATAACGACAACGAAACTATGATCTGGTTCCCCGCGAAGCTCACCGTGGAGAAGAAGAAGTACTTCCTGTTTGGGATTCTGTGTGGCTTGGCCTTCAACAACAGCTCTGTAGTCAATCTGCCTTTCCCTTTAGCCCTGTTCAAGAAACTTCTCAACATCAAACCATCTCTGGAAGATTTTATAGAGTTTAATCCAGTCCATGGCAGGAGTTTACAGTACATCCTAGAGTACAGTAATGATGTTCTGGAGGAATCGTCCTTGCCCTTAACGATAATATGGAGTGGATCAGAGCTGGACCTGGACCCTGCTGAGCCAGAACAGCACATCACGACTTCTAACAGAACTAAGTTTGTGGATGAATATGTGGATCACATCTTCAATCAATCAGTGAAGGAGGCGTTTGAAGAATTTAGAAGAGGCTTCTTTAGAGGATGTGAGAAACGCTTGGTGGAGATGTTTGAACCAGAAGAACTGAGGGGGGTGCTGGTGGGCAATGAGGAATATGACTGGAATATACTCAAGCAGAACACTACATATGAAGGCGTATTTAATGCGGATCATCCAGTCATAATCTCTTTCTGGGAGGTGTTTGATGATCTGACACCAAATGAGAAGAAGTCCTTCTTGTtgttTTTGACGGGGTTTGAGAGAGTGCCTATTCTGGGCATGAGCGCGGTGAAGATGAGAGTGACACATTTGGCTAACTCAACTGAGGATCATCTGCCAGAGACTCTCACCTGCCATTCTCTTCTGCAGCTTCCTAAATATGAGAAAAGGGAAACCCTCAGAGCCAAAGTTATTGAGGCCATCAGCCACAAGAGGGGGTTCTGGGAAGAATGAGGCGGATGATGCTCGTCTGAGGCACGTGTAGTCAATGATCTGATGACTTgattctgaaaatgtcttaatagtaaaaattactttaattaatattcagttgaagttagaattattatccctcctgaattattaggccccctgtactgtatatatattttcttcaaCGGAGAGCAGATCTTTTTAACAAAtatcttaacataatagttttaataactcatctctaataactgatttattttatctttgccatgatgacagtaaataatattttactagatatttttcaagacacttctatacagcttaaagtgacatttaaaggcttaactaggttaattaggcaagttagggtaattaggcaagtcataatgatggtttgttctgtagactatcaagaaaaaaggcgggtaataatattgaccttaaaatggtgtttaaaaattagaaattgcttttattcttgccaaaataaaacaaataagattttttccagaagaaaaaatattat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000075785

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001082 True 3639 mRNA 0.43 24 50613868 50637221

Neighbor

gene id symbol gene type direction distance location
XLOC_000634 pkd2 coding upstream 56838 50538839 ~ 50557030 (+)
XLOC_000633 NA coding upstream 82174 50528134 ~ 50531694 (+)
XLOC_000632 NA coding upstream 221079 50389319 ~ 50392789 (+)
XLOC_000631 aimp1a coding upstream 294214 50293938 ~ 50319654 (+)
XLOC_000630 npnta coding upstream 425862 50085440 ~ 50188006 (+)
XLOC_000636 herc3 coding downstream 2195 50639416 ~ 50691538 (+)
XLOC_000637 NA coding downstream 95935 50733156 ~ 50808448 (+)
XLOC_000638 BX855617.1 coding downstream 217143 50854364 ~ 50854478 (+)
XLOC_000639 otx2a coding downstream 284045 50921266 ~ 50929957 (+)
XLOC_000640 NA coding downstream 306371 50943592 ~ 50953558 (+)
XLOC_000628 NA non-coding upstream 690995 49920790 ~ 49922873 (+)
XLOC_000626 NA non-coding upstream 838928 49699382 ~ 49774940 (+)
XLOC_000623 BX321880.1 non-coding upstream 1023045 49590701 ~ 49590823 (+)
XLOC_000643 NA non-coding downstream 378637 51015858 ~ 51018551 (+)
XLOC_000651 BX547996.1 non-coding downstream 828247 51465468 ~ 51465582 (+)

Expression


Co-expression Network