XLOC_000636 (herc3)


Basic Information

Item Value
gene id XLOC_000636
gene name herc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 50639416 ~ 50691538 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001083
GAGTCGTAACTTCCTTGTTTTTGTCGGAACCATTAAACTGAAAGCATTCCAGCAATATACGGTCAAAATAAAGAGGAGGCGAGATGCATTTCACCAGATCCGTCATGTACAGGCGGAGACGGCAAGGCGGCACAGCCTAGGAGCTCTCCCCGATTCCAGATCCTTCCATCTGtttctctctctgtatgtgtgaATCATGATGCTGTGCTGGGGAAGCAGTGGCGCGGGTCAGCTAGGCATCGGTGCGTCAGAGGCGTCAGTCTTTGAGCCTAGGAGCTGCTGCGTGTTCGACGGCCGAGGGCTTAAAGAAGTGGCGTGCGGCAACCAGCACTCGCTCTTCCTGTTGCATGATGGAAGCGTCTACACCTGCGGATCCAACAGCTGCGGTCAGCTGGGCCACGACAAGGGAGGAAGCAGGCCAGaGTTGGTTGGCGCTCTGGACGCTCAGAAGATCTCCGGCGTGTCATGTGGTCAGGCTCACTCTCTGGCGGTGAACGAGCAGGGTCAGGTGTTTGCGTGGGGAGCTGGAGACGGAGGGCAGCTTGGTCTGGGAACAGCTGAAGAGGCGGTCCGCGTGCCTCGGTTGATTAAAAAGTTGTGCGAGCATCGGATCTCTCAAGTAATGTGTGGAAACCATCACTGTATAGCTCTTTCAAAAGatggTCAGTTGTTCGTATGGGGAGAGAACTCGAGCGGtcagctgggtttagggaagggagagCCGAGCACTCTGTCTCCTCAGCCGCTCAAATCTCTGTGTGGGATCCCACTGACCCAGATCAGCGCCGGAGGAGACCACAGCTTCGCCCTGTCCTTCTCTGGAGCTGTGTTCGGGTGGGGCAAGAACAGCGCTGGGCAGTTGGGTCTCAATGACGAGCAAGACCGAGCTGTTCCCTGCCACATCAAGTTCCTGCGCTCACAGAAGGTGGTTTACATCAGCTGTGGAGAGGAGCACACGGCTGCCCTGACAAAGGAAGGGGGTCTGTTCACATTTGGAAATGGTTCAAAAGGACAGCTGGGCCATGACTCCACCAGAAACGAGCCTCTTCCACGCAGAGTTATGGAGCTCATGGGCACTGAGGTGTCTCAGATCGCTTGTGGGCGGAACCACACCCTTGCATTCGTGCCCTCCACCGGTCTGATATATGCTTTTGGCTGCAACACTCAGGGCCAGCTCGGTACAGGCATAAGAGGAAGCGCCAAGAGCCCCGTTCCTGTCAGTAACATCCAGCCCCTTTGCATTGGAAATGCATACACAAGAACAGAGCACTGCACCATTGCGAAGATTCACAGTGGAGGAGATCATAATTTCCTGTTGTTGTCGACTGTGGAGGGTTTGTCTTGTCCTGATGATTTCCGCATTCTGAACACCACCAAAAGCATCGCTCTGATTAATTCTGAGAGTCTGGACAGCTGGAGGATGAAGCTTCATGACAACAGCGATTCCAGCATCACTAATGACATCATTCTGCTGTTGTCCTCGACTGCATGTTGGAATGCCAGCTTTTTGGACCAAAGTGATGACGGGCATTTCAAAACCAACCCCAAAGTCCCAGGCATCGATTTCAATGCTGTTCGGCTGCTTTTCGAGACCCTGATGAAACCAGCCTTCGCTAGACTTTTGGAGCAGATCACAAAGAGCTTTGAGAGTCTCCTGATCCCCCAGCTGCCCTGTTCTCCTCCTGACGTGGAAGCCATGCGGATCTACCTGATCCTGTCTGAATGTCCCGCTTTCCAGGACTCCAAAAACTACATCACTCTCACCATCCCTCTCGCCATGGCCATCCTCAGACTGGACGCCAACCCAAGCAAAGTGCTCGATAACTGGTGGTCGCTGATGGACTGCACGGTGTTTACCAGATTAGTGGAGATGTACAAAAGCATCGTTGTGTTTCTGTTGACCGGCGGGAAAGCTCTTCTGATGCCTGTGTTTCTGGAGAGCTACACCAGCGCCGCTTTGCGACTGCTGGAGAAACTACACAAGGTCAACCTGAAAGCCCATCGTGTGGAATACAACCACTTTTACATCCCCGACATCGCAACCCTGGTGGACATCCAGGAAGACTACCTCAAATGGTTTCTGCGCAAAGCTGATATTAAAATGCGATACCCTCCAGTGCAGGGTTCTGTCACGTTATGTGCCTATCCGTTCATATTGAACGCGCAAGCCAAGACAACCGTGCTGCAAACAGATGCTGAGCTGCAAATGCAGATGGCAGTAAGTGGTGCTAACTTGCACAACGTCTTCATGCTGTTGACCATGGAGCCTTTGCTGGCGAGAAACCCTTTCCTGGTGCTCCACGTACGGAGAAACCACTTAGTCAGCGACGCTCTCCGGGAGCTCACGATCTACAATGATGTAGACTTGAAAAAGCCACTCAAGGTCATCTTTGATGGAGAGGAAGCTGTGGATGCTGGAGGAGTCACCAAGGAGTTCTTCCTGCTGCTGCTGAAAGAGCTGATGAACCCCATCTACGGCATGTTCACGCAGTATTCAGAATCCAATCTGCTGTGGTTCTCTGACAAATGTTTTGTGGAGCACAATTGGTTCCACTTGATTGGCATAATCTGTGGTTTGGCCATCTATAACTCCACTGTGGTGGACCTGCACTTTCCCCTGGTGCTCTACAAGAAGCTCCTGGAAATTTCGCCCACTCTGGATGACCTGAAAGAACTTTCGCCTACAGAGGGAAGGAGTTTGCAGCAGCTGCTGGAGTTTGAGGGTGATGTGGAGGAAACCTTCTGTCTCAACTTTGCCATCACGAGAGAGTATTATGGGATCACGGAGGTGAAGGAGCTGGTGCAGGGAGGAAAAACCATCGCTGTGGACAAAACCAACAGGAAGGAGTTTGTTCAGGCGTATCTGCAGTATGTGTTCAGCGACGCAGTACAGGAGCAGTATTCGGCCTTCTCCAGTGGTTTCCTGAAGGTCTGCGGTGGGGAGATTCTGTCTCTCTTCCAGCCCTCTGAACTCATGGCCATGGTGGTGggcaacaacaactacaactggGAGGAGATGGAGAAGAATGCCTCATACAAGGGCGAGTTTTCTGCAACCCACCCAACAGTAAAGATGTTTTGGGAAGTGTTTCATGAGTTTTCCTTGGAGAAAAAAAAGCAGTTCTTATTGTTCTTGACAGGCAGTGACCGCATCCCCATCCACGGCATGGCCAGTTTGCGCATTGTCATCCAGTCCACGGCTGCAGAAGAGCACTACCTTCCAGTGGCTCACACCTGTTATAATATGCTGGACATGCCCTGCTACCAGACCAAAGAGACCCTGCGGCAGCGCCTCACACAGGCCGTGGAGCAGTACGAGGGCTTCAGTCTGGTCTAAACAAGAACTACGGAGGGGGCTTTCTATATGCTGAAACTGCACTTTAAACCCGTGGAGAAATGGAAACGAACGCTGCTCTCGCATTTGTTTTACCACAAACGAGCACATCTCGATTCTCATACGAGTAAAatctattattttcttattttttactgACTGACTCTGACTTGCTTGTTTGGTCGCATCTTGAGACGTGCacaattttttcccttttttttccctcttcttttttttggttaaaaaaattatattttttaaatgaaaaaaaataattataatattaggaATGAGTAGTTGGcaaataaattaagatatttgaCTTTcgttatatattttgtataagtGTAATTGTTTTT

Function

symbol description
herc3 Predicted to enable ubiquitin-protein transferase activity. Orthologous to human HERC3 (HECT and RLD domain containing E3 ubiquitin protein ligase 3).

GO:

id name namespace
GO:0016740 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-090313-139 Predicted to enable ubiquitin-protein transferase activity. Orthologous to human HERC3 (HECT and RLD domain containing E3 ubiquitin protein ligase 3).

Ensembl:

ensembl_id ENSDARG00000075887

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001083 True 3693 mRNA 0.50 25 50639416 50691538

Neighbor

gene id symbol gene type direction distance location
XLOC_000635 si:ch73-190m4.1 coding upstream 2195 50613868 ~ 50637221 (+)
XLOC_000634 pkd2 coding upstream 82386 50538839 ~ 50557030 (+)
XLOC_000633 NA coding upstream 107722 50528134 ~ 50531694 (+)
XLOC_000632 NA coding upstream 246627 50389319 ~ 50392789 (+)
XLOC_000631 aimp1a coding upstream 319762 50293938 ~ 50319654 (+)
XLOC_000637 NA coding downstream 41618 50733156 ~ 50808448 (+)
XLOC_000638 BX855617.1 coding downstream 162826 50854364 ~ 50854478 (+)
XLOC_000639 otx2a coding downstream 229728 50921266 ~ 50929957 (+)
XLOC_000640 NA coding downstream 252054 50943592 ~ 50953558 (+)
XLOC_000641 mdh1aa coding downstream 277370 50968908 ~ 50990889 (+)
XLOC_000628 NA non-coding upstream 716543 49920790 ~ 49922873 (+)
XLOC_000626 NA non-coding upstream 864476 49699382 ~ 49774940 (+)
XLOC_000623 BX321880.1 non-coding upstream 1048593 49590701 ~ 49590823 (+)
XLOC_000643 NA non-coding downstream 324320 51015858 ~ 51018551 (+)
XLOC_000651 BX547996.1 non-coding downstream 773930 51465468 ~ 51465582 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000301_00827494_00848481 HERC3 coding CI01000301 null 827494 ~ 848605 (+)