XLOC_000640


Basic Information

Item Value
gene id XLOC_000640
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 50943592 ~ 50953558 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003159
TcggaatcacttgagggtgacTAAATAGCCCCCGAGGGAAGCCAAGGAGAAGAAAGGAGACATGAAGGAGATAAAGAAAGGGCTGATGAGGAGGGCAGGAGAACGAGCGCACAACCGCACCCGATGCCATTCAGAGCGGGACAGGGACAGAGTGGCGCCAGCACACGGCCACTGTTCAAAACCACCAAAAATCCTAGTGGCCGATCAAGTGTCTCCTTCTAAAAACAATGGCAGACATGACAGCTCGcggtatgtgtgtgcatgtgtgtgttgtcatgtgtCTCTATTCATGCCagcacatgtatgtgtgtgtggtgaagAAATGCGTCTTTGGCACCTGAGAGCAGGTGACGAGATGAAGAGTTCATGTTGCGGTTGAAGGTCAGAGTTTGACAGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003159 True 397 lncRNA 0.51 2 50943592 50953558

Neighbor

gene id symbol gene type direction distance location
XLOC_000639 otx2a coding upstream 13635 50921266 ~ 50929957 (+)
XLOC_000638 BX855617.1 coding upstream 89114 50854364 ~ 50854478 (+)
XLOC_000637 NA coding upstream 135144 50733156 ~ 50808448 (+)
XLOC_000636 herc3 coding upstream 252054 50639416 ~ 50691538 (+)
XLOC_000635 si:ch73-190m4.1 coding upstream 306371 50613868 ~ 50637221 (+)
XLOC_000641 mdh1aa coding downstream 15350 50968908 ~ 50990889 (+)
XLOC_000642 ugp2a coding downstream 43598 50997156 ~ 51015627 (+)
XLOC_000643 NA coding downstream 62300 51015858 ~ 51018551 (+)
XLOC_000644 dpy30 coding downstream 86000 51039558 ~ 51042332 (+)
XLOC_000645 srd5a2a coding downstream 113113 51066671 ~ 51073128 (+)
XLOC_000633 NA non-coding upstream 411898 50528134 ~ 50531694 (+)
XLOC_000632 NA non-coding upstream 550803 50389319 ~ 50392789 (+)
XLOC_000628 NA non-coding upstream 1020719 49920790 ~ 49922873 (+)
XLOC_000651 BX547996.1 non-coding downstream 511910 51465468 ~ 51465582 (+)
XLOC_000655 CU464066.1 non-coding downstream 729961 51683519 ~ 51683618 (+)
XLOC_000656 NA non-coding downstream 741193 51694751 ~ 51717215 (+)
XLOC_000658 NA non-coding downstream 799420 51752978 ~ 51826020 (+)

Expression


Co-expression Network