XLOC_000643


Basic Information

Item Value
gene id XLOC_000643
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 51015858 ~ 51018551 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003160
tctgcagaaatctgcgcgcgcagattccgtgtgggcctactaaaaacacaccaataataccaccactactactaaaCAACAAGGCTACAACAACAAAGAATTTTGACTACAAATGACTACATCACAACAACTACAAAGACATGACTACAACACACTAAAATCAAGACTACAACACAACAACCCTACTACAACAACTAAAATATGACATTTTGCCTACAAAATGACCACAACACAACTACAACAAACAGGCTACAACTAAAATATGATAGTTTGACTACAAAATAACTACAGCACAACAACTACAATGACATGACTACAACACTAACAACAAAACTACAACACAACAACCCAACTACAACAACTAAAATATGACATTTTGCCTACAAAATGACCACAACACAACTACAACAAACAGGCTACAACTAAAATATGATAGTTTGACTACAAAATAACTACAGCACAACAACTACAATGACATGACTACAACACTAACAACAAAACTACAACACAACAACCCAACTACAACAActaaaatatgacattttgacTACAAAATGCCTACACAACAACTACAACGGCACGACTACAACACACTAACAACAAGATTACAATCTTACAACTAAACTATGATATTTTCAATTCAAAATGGCTACAACGCCATGACTACAACACACTGACAACATAACTACAACACATCAACAAGAAGACCACAACCCGACTACAACTAAAATGACATTTTGCATACAAAATGACTACAGCACACCAACAACATGACTATaacacaccaacaacaacaacaacgtcaCTACAACAAATACAACGGCATGACTAACACACTAACAACATGACTACAACCCAACTacaacaactaaataaaatatgacatgtTGACTACAAAATGACAACAACACAACTAACAATAGGAGTACAACACACCGACAACCATACTACAACACGACACCCCAACTAAAATAATACATTGActacaaaataacaacacaacaaCCACACAACTACAACTAAAATATGACTACAACATAACTACGGCACAAACAACTACAACAGCATGACTACCACACACTAACAACCTAACAACAACCCAACTACAACAATGACATGTTGACTACAAAATGACAACAACACACTAACAATGGAAGTACAACACACCGACAACCAGACTACAACACCCCAACTAAAATAAGACATTGACTACAAAATGCCTACACAACAACTACAACGGCATGACTACAACACTAGTAACGTGACTACAACCCAACACAACAGCCTGCTTACAACTTAAGTATGACATTTTGAGTACAAAATAACTACAGCACTACTACAACAGCATAACCACAACACAGCTACAATACACAAACAACATGACTACaactaaaatattacattttgactACGAAATAACTACACAACAACCACAACACACCAACGACACGACTACAACTAAAATATAACGTTTTGACCAACTAAAAGATGACTACAACATAACTAcagcacaaacaacaacaacagcatgaCTACCACACACTAACAACGTGACAACAACCCAACTACAACAACTGAAATATGACATGTTGACTACAAAATGACAACAACACACTAACAATGGGAGTACAACACACCGACAACCAGACTACAACACCCCAACTAAAATAAGACATTGACTACAAAATCCCTACACAACAACTACAACGGCATGACTACAACACACTAGCAATGTGACAACAGCCTGAGTACAACTTAAGTATGACATTTTGAGTACAAAATAACTACAGCACTACTACAACAGCATGactacaacacacaaacaacatgaCTACAACTAAAATGACATTGAGTACAAAATGACTATAGCACACCAACAACATGATTATAACACACTAACAACAAGATTGAAACACAACAACCCAACTACAACAACTAAATTATGACATGTTGACTACAAAATGACTACACAACAACTACAACGGCATGACTACCACACACTAACGATGTGACTACAACCCAACTACAACAACTAAGCAACAACTGTAGCACAAACAACTACAATGCGACAACAGCATGCCTACAACAACAATATGGTTAGAGCTTGACTACAACATGACTACAGCGCAACTACAACAAGAACATGACTACAATGCTACATCATGTCTACAGCGCAAATGTGTCACGATTACAGCAGGACTACTACAACACAACTATGACTACAAACCACAGCATAACTGAAACAAGACGATTCTATCATGATTACAGCATGACTACTACAACACAACTATGATTACAGCATGACTACTACAACACAACTATGATTACAACATGACTACTACAACACAACTATGATTACAGCATGACTACTACAACACAACTATGATTACAGCATGACTACTACAACACAACTATGATTACAGCATGATTACAGCCTCCATCATGTCACTGGGGCATTTATTattcatgtgtgtatgtataaatgtgtgaAATGTGAGTGTGGCCATCAAAAGCCGTCTGTCTGACCAGCATTAAATGCCCATCATACGTGACAGTGAGCTGGGCTGAATATTCAGGTTTAGCATGACTGGTTTTGCTGCTATGTAGCTCTCAGTAATGGCAGAGGATGGAAACAGGTGCTGTCCCTTTAAAACCTCATCTGTCCATAgaaattaaaaagatttttgatCTTCA

Function

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane biological_process
GO:0007601 visual perception biological_process
GO:0030537 larval behavior biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0070142 synaptic vesicle budding biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0008345 larval locomotory behavior biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0051656 establishment of organelle localization biological_process
GO:0034703 cation channel complex cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0044297 cell body cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0098793 presynapse cellular_component
GO:0000149 SNARE binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003160 True 2694 lncRNA 0.37 1 51015858 51018551

Neighbor

gene id symbol gene type direction distance location
XLOC_000642 ugp2a coding upstream 231 50997156 ~ 51015627 (+)
XLOC_000641 mdh1aa coding upstream 24969 50968908 ~ 50990889 (+)
XLOC_000640 NA coding upstream 62300 50943592 ~ 50953558 (+)
XLOC_000639 otx2a coding upstream 85901 50921266 ~ 50929957 (+)
XLOC_000638 BX855617.1 coding upstream 161380 50854364 ~ 50854478 (+)
XLOC_000644 dpy30 coding downstream 21007 51039558 ~ 51042332 (+)
XLOC_000645 srd5a2a coding downstream 48120 51066671 ~ 51073128 (+)
XLOC_000646 btbd3a coding downstream 172498 51191049 ~ 51197601 (+)
XLOC_000647 ndufaf5 coding downstream 202769 51221320 ~ 51229456 (+)
XLOC_000648 mast1a coding downstream 294201 51312752 ~ 51377850 (+)
XLOC_000637 NA non-coding upstream 207410 50733156 ~ 50808448 (+)
XLOC_000633 NA non-coding upstream 484164 50528134 ~ 50531694 (+)
XLOC_000632 NA non-coding upstream 623069 50389319 ~ 50392789 (+)
XLOC_000651 BX547996.1 non-coding downstream 446917 51465468 ~ 51465582 (+)
XLOC_000655 CU464066.1 non-coding downstream 664968 51683519 ~ 51683618 (+)
XLOC_000656 NA non-coding downstream 676200 51694751 ~ 51717215 (+)
XLOC_000658 NA non-coding downstream 734427 51752978 ~ 51826020 (+)
XLOC_000660 NA non-coding downstream 832010 51850561 ~ 51864765 (+)

Expression


Co-expression Network