XLOC_006430 (atl2)


Basic Information

Item Value
gene id XLOC_006430
gene name atl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 8281223 ~ 8304605 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012452
CCTTCCTTTGTgtacaaaacatttttgaatgagTGCATGACgttgatatgtacagtatgtgagaAACTGGGGCTGTGCGACGTCACGCAACAAAGTTTCAAGAGAACCAAGATGGCGGAAGACAGCGGACCGAGGAATCGGCAATTCTCTGCGACGAAACATAAATTAAACAACTTTGATGAAGATATGACTGGTGTGCAGGACGTTCCAATCTGGAGCCCAGCTGAGACGTTGAGTACATTGGAGGAGTTTAGCTCTGATACTAACGGTGTGGCCCCATGTGCTGTAGCTGAAGAGCTCGAGTTAGAGGAGGACCCGGTTCCAGAAGGAGCTCGACCCATCCAAATTGTTATTACTAATGAAAACGATCATAAGTTTGAGTTGGATGCTGCTGCGTTGGAAAAAATCCTGTTGCAGGAACATGTTAAGGATCTCAACGTGGTTGTGGTGTCTGTTGCCGGCGCCTTCCGCAAGGGCAAATCTTTTCTGCTGGACTTCATGCTGCGTTACATGCATGATCAGTCAGCTGAGTCATGGATAGGAGGAGATGATGAGCCATTGACCGGTTTCTCCTGGAGGGGTGGCTGTGAGAGAGAGACCACGGGAATCCAGGCTTGGAGCGAAGTATTTGTTGTGGAAAAGAAAGATGGAACTAAGGTGGCTGTGCTGCTGGTGGACACTCAGGGAGCCTTTGACAGTCAGTCCACTATCAAAGACTGTGCCACTGTTTTTGCTTTAAGCACCATGACCAGCTCTGTGCAGGTTTATAATCTTTCTCAGAATATCCAAGAAGATGATTTGCAGCATCTCCAGCTTTTCACAGAATATGGTCGACTTGCAATGGAGGAGATCTACGAGAAGCCATTTCAGAAACTGTTGTTTCTGATCAGAGACTGGTGTTACCCCTATGAACATGACTATGGGCTCAAAGGAGGGAATAGTTTTTTGGAGAGAAGACTGCAGgtGAAGCAGAACCAACACGAAGAGCTGCAGAATGTGAGGAAGCACATCCACAGCTGTTTCTCCAGCATAGGCTGCTTTCTTCTTCCACATCCAGGTCTGAAGGTGGCCACCAACCCTCACTTTGATGGCAGATTGAGAGaGATTGATGATGAGTTCAAGAGGGAGCTGCAGAATCTAGTTCCTTTACTGCTGGCACCAGAGAACTTGGTAGAGAAAGAAATCGGTGGAGCTAAAGTCACATGCAGAGATCTGGTGGAGTACTTCAAGGCATATATCAAAATCTACCAAGGGGAGGAGCTTCCACATCCTAAATCCATGTTGCAGGCAACTGCTGAAGCGAACAATCTGACAGCTGTCGCTGGAGCAAAAGACACTTATAACAGAACCATGGAGCAGGTGTGTGGAGGAAACAAACCATACATCGCCCCAGTTGACCTTCAGCGCTATCATGATGAGTTTAAGAAAACCTCAGTCGATCAGTTTCGCGGGGTGAAGAAAATGGGCGGTGTAGAGTTCTGTCATCGCTATCAGGAGCAGTTAGAGACAGAGCTCGATGAAGTGTACACAAATTTCGTGAAACACAATGAAAGCAAGAACATTTTCTATGCAGCAAGAACTCCGGCCACCCTGTTTGCAGTCATGTTTGTCACCTACATGGTCTCCACCGTAACTGGATTTATTGGCTTATCATTCATCGCTGCTCTGGCCAGTGTGGTGATGGGGGTAACTCTGCTGTCGCTGTGTGCCTGGTCATATGTCAGATACTCAGGAGAGTATCGAGAAGTGGGAGTGACTATAGACCTAATAGCAGAGGCCCTGTGGGTACAGGTGCTGAAGCCACTTACTGAGCAATACATGGAAGAAAATGTCCGACAGACTGTTGTGAACTCGATAAGAGCCTCGCTAACAGATCAGGTGACACAAGCTACAAAGTTGAAGACCAACTGACAGTTTGCTCTGCCTTATCTGCCCAGTGTTTGAACAATCACTGCTTTTATATTGTGTAGTTTTTGTGATGTTTGGTCATGTAGACTCTAACCAAAGTTTACAGCGTTATTTACCCTGACCAATAAACACACCAACAAACAGACTTGCATTATAATCTCAACGGACATCATTACAAATGCTTCTAAATTCAGGTTTAAGTGATCAGGTATATGTGCAGCTTTGAATTTCCCTTGGCTAGAGGGATTATTCAGGACAGCACCGCAAATGTTTTACAATCTGTAAGTTAATTGGGACACTGTATTTCCTTTTGTTGAACAGTTGAATTCCAGTTCTCTGTGGATAATTTGGTTATCATTTTCCATTTAGACTTCTACCGCATAGTTACTTGGTGTAAAAACCTAATAGCCTATTTGCTGGATTTCTTGTGAGGTATTTTTAGAGCCTTTAAGGAATGCTGAAGTTGTAAATCCATCCAAGACACCCCTCTGCTGGGCCTCTTTCTGTACAGTGTTGTTGTAGACTGTATAATAGCCTCATGCATGTAAATGAGTGTACAAATATCAGCTGTAGATCGTACGAGGATTTCATTTACAGACAATGTTTGGAGATGATTATGAATGTGTCTCCCCAGTTGCCTTTTGTTGTGCTTCTCCAAGTTCAGAGCACCTTCCACTGAGCAGTTTTCTGACGCAGGAAGAGTGCTCATGAGATGACTTGATTGTCAATCTTTTAAAGGTTAtgccatttaatttattttttaaacaattaaaatatgtcAAATGTG
>TCONS_00012453
GGACCGAGGAATCGGCAATTCTCTGCGACGAAACATAAATTAAACAACTTTGATGAAGATATGACTGGTGTGCAGGACGTTCCAATCTGGAGCCCAGCTGAGACGTTGAGTACATTGGAGGAGTTTAGCTCTGATACTAACGGTGTGGCCCCATGTGCTGTAGCTGAAGAGCTCGAGTTAGAGGAGGACCCGGTTCCAGAAGGAGCTCGACCCATCCAAATTGTTATTACTAATGAAAACGATCATAAGTTTGAGTTGGATGCTGCTGCGTTGGAAAAAATCCTGTTGCAGGAACATGTTAAGGATCTCAACGTGGTTGTGGTGTCTGTTGCCGGCGCCTTCCGCAAGGGCAAATCTTTTCTGCTGGACTTCATGCTGCGTTACATGCATGATCAGGTTTCAATGAATctccttttattaatttaagagTATGGCTAGTTGACAAATGAGCATAATTTAATGAGATGATTTACcctaaaataaatgttctgtTTTCATTTACTCTTCCC

Function

symbol description
atl2 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endoplasmic reticulum organization and protein homooligomerization. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATL2 (atlastin GTPase 2).

GO:

id name namespace
GO:0007029 endoplasmic reticulum organization biological_process
GO:0051260 protein homooligomerization biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6505 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endoplasmic reticulum organization and protein homooligomerization. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATL2 (atlastin GTPase 2).

Ensembl:

ensembl_id ENSDARG00000057719

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012452 False 2695 mRNA 0.44 13 8281223 8304605
TCONS_00012453 True 509 lncRNA 0.43 2 8296326 8304479

Neighbor

gene id symbol gene type direction distance location
XLOC_006429 si:ch211-250c4.5 coding downstream 1690 8272043 ~ 8279533 (-)
XLOC_006428 NA coding downstream 51058 8168713 ~ 8230165 (-)
XLOC_006427 macroh2a2 coding downstream 513623 7753049 ~ 7767600 (-)
XLOC_006426 NA coding downstream 532022 7747111 ~ 7749201 (-)
XLOC_006425 pitx3 coding downstream 706007 7555720 ~ 7575216 (-)
XLOC_006431 dhx57 coding upstream 15850 8320455 ~ 8353560 (-)
XLOC_006432 epas1b coding upstream 71007 8375612 ~ 8446341 (-)
XLOC_006433 prkceb coding upstream 147749 8452354 ~ 8601184 (-)
XLOC_006434 BX004962.1 coding upstream 345106 8649711 ~ 8650051 (-)
XLOC_006435 BX004962.2 coding upstream 350514 8655119 ~ 8655447 (-)
XLOC_006338 rn7sk misc downstream 7454998 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 1960136 10264741 ~ 10264905 (-)
XLOC_006421 NA non-coding downstream 958547 7269212 ~ 7322676 (-)
XLOC_006422 NA non-coding downstream 964284 7305415 ~ 7316939 (-)
XLOC_006419 NA non-coding downstream 1126386 7154322 ~ 7154837 (-)
XLOC_006437 NA non-coding upstream 456089 8760694 ~ 8776477 (-)
XLOC_006458 NA non-coding upstream 1197162 9501767 ~ 9558425 (-)
XLOC_006467 NA non-coding upstream 1772610 10077215 ~ 10118935 (-)

Expression

Expression of XLOC_006430(atl2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Expression of XLOC_006430(atl2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network