XLOC_006437


Basic Information

Item Value
gene id XLOC_006437
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 8760694 ~ 8776477 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012463
ACGCTTTTTGTCGTAGTGCTGTAATTAGGTAACCATGAACGACAGAATTATACCCGCAGGAAGAGAGAAAATATTACCCAAAGAAAAAGGCGTAGATGAGaAACAGAAGGAACAACTGTACACTGAAAGAAGCAGTTGGTGGAGAAATACTATTAAGAACTATCCTATTCCTGGTAGCTACCACATCCGAGACTTCTTAGAGGAGACAAAactcaaccctgttcctagaaCATACAGCTTCAAAGGGCCTGGGCGAAATACCCTCATGTCCACCATGGGTCAAGGGGAAATGCTATTACCCGGAGCATATAACTTCACCAACTCGACCACTGAGGCTCTCCGGTACCAAGCAACTTACTCTTTCAGAAGCTGTCCCAGACCTGACAACTACACTTTAGGCCTCAGGGATAAGAGAAGCCAGTCTCCAAGTCACCCTGCAAACATGTGATGTTCCGATCAGTGGTACAGAGAGTCAGCTTTCTCCCGAAAGAGGGACCAGCACCTGGACATTATAACCCAAGACAAAGCACAGGCACTGCAGTAACCTCCTGCTTTAGGTCAACAGTACCACGTCTATATAGTGTGCACATGggaaCTCCAGGACCAGGTACATATCAGCTCACCTGGCACAAAGGGCAGCGGAATAGCACTGACATTAAAATGAACAAGACCCACAACCTCCTTTTCCGCAGCATACCTTGAAATTTCCCCTCCCTTTTGCCTTTGGGTTTCCTATAATTCTTaatatcattcatttttcttcaactTAGTTCCCTCagtcatcaggggtcgccacagtggaatgaactgccaacttatccagcgtatgttttaaacaggtgtgttttcaggtgtattactgtatattttatgctAGTTTgaattcacaataaatgaaatTAGATG
>TCONS_00012462
CTTTTTGTCGTAGTGCTGTAATTAGGTAACCATGAACGACAGAATTATACCCGCAGGAAGAGAGAAAATATTACCCAAAGAAAAAGGCGTAGATGAGaAACAGAAGGAACAACTGTACACTGAAAGAAGCAGTTGGTGGAGAAATACTATTAAGAACTATCCTATTCCTGGTAGCTACCACATCCGAGACTTCTTAGAGGAGACAAAactcaaccctgttcctagaaCATACAGCTTCAAAGGGCCTGGGCGAAATACCCTCATGTCCACCATGGGTCAAGGGGAAATGCTATTACCCGGAGCATATAACTTCACCAACTCGACCACTGAGGCTCTCCGGTACCAAGCAACTTACTCTTTCAGAAGCTGTCCCAGACCTGACAACTACACTTTAGGCCTCAGGGATAAGgATATTAACCTCTCACCTGGTCATTATGATATTACAGAGAAGCCAGTCTCCAAGTCACCCTGCAAACATGTGATGTTCCGATCAGTGGTACAGAGAGTCAGCTTTCTCCCGAAAGAGGGACCAGCACCTGGACATTATAACCCAAGACAAAGCACAGGCACTGCAGTAACCTCCTGCTTTAGGTCAACAGTACCACGTCTATATAGTGTGCACATGggaaCTCCAGGACCAGGTACATATCAGCTCACCTGGCACAAAGGGCAGCGGAATAGCACTGACATTAAAATGAACAAGACCCACAACCTCCTTTTCCGCAGCATACCTTGAAATTTCCCCTCCCTTTTGCCTTTGGGTTTCCTATAATTCTTaatatcattcatttttcttcaactTAGTTCCCTCagtcatcaggggtcgccacagtggaatgaactgccaacttatccagcgtatgttttaaacaggtgtgttttcaggtgtattactgtatattttatgctAGTTTgaattcacaataaatgaaatTAGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-141222-51 Predicted to act upstream of or within positive regulation of DNA demethylation.

Ensembl:

ensembl_id ENSDARG00000089552

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012463 False 906 lncRNA 0.44 7 8760694 8776477
TCONS_00012462 True 939 mRNA 0.44 7 8760695 8776474

Neighbor

gene id symbol gene type direction distance location
XLOC_006436 mcfd2 coding downstream 67834 8682176 ~ 8692860 (-)
XLOC_006435 BX004962.2 coding downstream 105247 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 coding downstream 110643 8649711 ~ 8650051 (-)
XLOC_006433 prkceb coding downstream 159510 8452354 ~ 8601184 (-)
XLOC_006432 epas1b coding downstream 314353 8375612 ~ 8446341 (-)
XLOC_006438 calm2a coding upstream 1156 8777633 ~ 8785610 (-)
XLOC_006439 si:ch73-105b23.6 coding upstream 22691 8799168 ~ 8815530 (-)
XLOC_006440 si:ch73-105b23.1 coding upstream 48715 8825192 ~ 8829392 (-)
XLOC_006441 plekhh2 coding upstream 70944 8847421 ~ 8892514 (-)
XLOC_006442 si:dkey-112g5.12 coding upstream 226098 9002575 ~ 9236954 (-)
XLOC_006338 rn7sk misc downstream 7934469 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 1488264 10264741 ~ 10264905 (-)
XLOC_006428 NA non-coding downstream 530529 8168713 ~ 8230165 (-)
XLOC_006426 NA non-coding downstream 1011493 7747111 ~ 7749201 (-)
XLOC_006422 NA non-coding downstream 1443755 7305415 ~ 7316939 (-)
XLOC_006458 NA non-coding upstream 725290 9501767 ~ 9558425 (-)
XLOC_006467 NA non-coding upstream 1300738 10077215 ~ 10118935 (-)
XLOC_006468 NA non-coding upstream 1374442 10150919 ~ 10232078 (-)
XLOC_006469 NA non-coding upstream 1473697 10250174 ~ 10253034 (-)
XLOC_006472 NA non-coding upstream 1498809 10275286 ~ 10346890 (-)
XLOC_006421 NA non-coding downstream 1438018 7269212 ~ 7322676 (-)

Expression


Co-expression Network