XLOC_006453 (si:dkey-33c12.4)


Basic Information

Item Value
gene id XLOC_006453
gene name si:dkey-33c12.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9339919 ~ 9368535 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012523
GCTGTGAGTGAGCGCTGTGTGGTGTGTGCAAAGGTGGGGAAGAATCTCGAGAAAAGAGTGCGACTGAAAGGCATGTTAGACCATTAAGAAGATacgtaaatatttaataatacagtattatatcaaatataaatatattcgtGATAATGTCAATATCAAAAAAGCATACCATAGGACCAGACTACTTCCTGCTGCAAAATGATGAGCGCCTCATGCGGACCCACGAGGCTATGGTGGATATGATCAATGATAGACCGGCAAATCGCAACATCTTAGATGCCTTAAGTTTTGGTTATAAATACGttCCAGAACTGGACCACTTTGCAGCTCAGTTTCCTGGATATGAAGATTCATCTGatgaggattattattattatgatgacgATAAATACAGTAGTCATACAAATAACAGATACTGTGGCTTTTCACGCAACTTCCTAGACAGAGGTCTACCAAAACCAATAACAGCTGAGGAAGCGGAAAGAAATGCAAAAGAGCTAGTGGATGAGGaagaaaaaattaagaaaaaagcagagaagaaaaaaatgaaaaaaatgAGACAAAAAGAGAGACGTCGCCTGGAAAAATTAGAGaaagaaaatgcaaataaagaaaaaaataaaccgGTACAAGTTGACCCTGGACCAGAAAAGACCAAACATGCAGATAAAGATAatgaaaataaagataaaaaatgtaaaaataaaggttGTTCATCTGTGCCTCCTGACCCTCAGCCCATTTCAGCCCCCGTGTCGAGCAGTGATAGCAGTAGTGATGAGGAAGACGATAAAAAGGAAGATTCTGCAATAGAACCAGAGGAGCTCGACATGAATAGCTGCTTTGTGTCAAACGCAGCTGCTATTGCCAAACGCAAACTGGAACAGAAACCTAAACCTGACAAGAAGCCTGCTCAAGCAAACCCAAAAAAACAACACGAATCCCAGCAGAAAGCCACTGTGATGCCTCAAAAGCAGGTTGCTAAAGAAGAGGTGAATGGAGAGGAGTCTGTCAATGCAAATGATTTTATTACAAGAAGTGTGGAGCTGGCAGTTATAGGTAATGAGTACGCCGGCTCAGGAAACATGGAGATGGCTGTGAAATATTTTACCGATGCTATAAAGCACAACCCTAAAGAGTATAAGTTATTTGGAAATCGTTCTTACTGCTATGAAAAGATGCTTCAGTATGAGAAATCTTTAACCGATGCTGAAATTGCTCTTTCTATGAACCCTAAATGGATTAAAGGGCTTTACAGAAAAGGCAGAGCATTGGTTGGACTAAAGAGATATAATGAAGCCAGACTTACATTTGGTGAAGTTTTAAAACTGGACAGCTCTTGTAAAGATGCGGCTGAGGAGATTATGAGAGTGCAGCTCATGCAACTTATGGAAATGGGATTCACCAAAGAACAGAGTTCAAATGCGCTTATAATCCATGGAACTGTAGAAAGAGCCCTAGAAAGTCTGTCTGGACTATCAGGTTTAGCCCCTGTCCTTGTGCCCAAAGAAAACGAGTTTAAATCAGTACAGTACAAACACCCTCAACCTCCAGCTAAATTCCCTCTCATGCCTCTTCCTCAAAACCAGCCTCGACCCAGCATGCCAACCGCTGCTCCACTTCCCCCTCATTCCCCAGAGCTGTTCCCCATCTGGGTCGGAGACTTGGTGAGTTCTATAACCGGGAGCAAGCTTTATGACCTATTCAAATCTGTTGGGAATATCCATAATGTAAGAGTGTTGCCTGACAGATACTGCGCATTTGTTAACTACACCAGCAAGGACAGCTGTGAGAAAGCCATACAAATGTTCAATGGTCATGCCATTGATGGGACAACTCTAGTAGTGCGTTATCCAGATAGAATTCACACTCGTCTCGGAATGTCTAGAGATGCTTCAACTGAGTCCTCAGGAAAGAATGGcaaacagcctaatgaatgttatttttggAGGATGTATGGCTGTAAGAATGAACGCTGCACCTTCAAGCATATTCCAGAAAACAAGGGCATCGATCGACCTAAAGCCAAACCACACACCTGACTCTCTGCATAATGTCAGAGATTTAAACACCGTCAAATCACTAGAATTAGTTGGATTTAGTAAATGTTTCAAATGCATAAAACTTTGGCGCATGGTGTTTTGGTCATTTAGCTGCATTTCAtatccttttttttccttttaaaaaaaaagtcttaatatCTGCATAGGCGAAGAGAGTTTCAAGTTAGGATGAACAGGTATGATGGCTTAAgtttaattcacttttattttctttataattctCCCACAGATTAATACATGTACATTTTTAAGTCAGTTATTGGTTTTAGTTGCTGGCTTTGCGAAATTGTGACATGAtgctttatattaaatataagcgATCAAAAAGTTGAATGATTGGTCACCGCAgaggtttaattttattttttttaagttttctgaAAAGTATTTCCCTTAATGATGGCATTGTCTGAGGGTTTTAAACCGTAAGTATCATTACACTGGTTTTATTTGACTTCTGACCTGCAGGATTTAACCTGCCTCAGTAAAAGCTGAACTGTTAAAATGTCGGATTCAATTTAAGATCGGTCTCGTGCCACTTCTGCTGTAGGAATGACCTGCAGTACACAGTATCATACCGTATTAGTTAGGCTGGAAAATGAAAGCTTTCAGTTGTAATTGATTTTCATTGTTATGCCTGTAAAGCACTACAAAATTGTTCTCTGTGCTACAATAAAAGGTGACCTGTGACATCTGCTATT
>TCONS_00012524
gttttttttctattaaagttCCAGAACTGGACCACTTTGCAGCTCAGTTTCCTGGATATGAAGATTCATCTGatgaggattattattattatgatgacgATAAATACAGTAGTCATACAAATAACAGATACTGTGGCTTTTCACGCAACTTCCTAGACAGAGGTCTACCAAAACCAATAACAGCTGAGGAAGCGGAAAGAAATGCAAAAGAGCTAGTGGATGAGGaagaaaaaattaagaaaaaagcagagaagaaaaaaatgaaaaaaatgAGACAAAAAGAGAGACGTCGCCTGGAAAAATTAGAGaaagaaaatgcaaataaagaaaaaaataaaccgGTACAAGTTGACCCTGGACCAGAAAAGACCAAACATGCAGATAAAGATAatgaaaataaagataaaaaatgtaaaaataaaggttGTTCATCTGTGCCTCCTGACCCTCAGCCCATTTCAGCCCCCGTGTCGAGCAGTGATAGCAGTAGTGATGAGGAAGACGATAAAAAGGAAGATTCTGCAATAGAACCAGAGGAGCTCGACATGAATAGCTGCTTTGTGTCAAACGCAGCTGCTATTGCCAAACGCAAACTGGAACAGAAACCTAAACCTGACAAGAAGCCTGCTCAAGCAAACCC
>TCONS_00013752
GGTTCGACGCGTTCATGTTGCACGCTGATGCGCATGCGTGCTGCTGTGAGTGAGCGCTGTGTGGTGTGTGCAAAGACTACTTCCTGCTGCAAAATGATGAGCGCCTCATGCGGACCCACGAGGCTATGGTGGATATGATCAATGATAGACCGGCAAATCGCAACATCTTAGATGCCTTAAGTTTTGGTTATAAATACGttCCAGAACTGGACCACTTTGCAGCTCAGTTTCCTGGATATGAAGATTCATCTGatgaggattattattattatgatgacgATAAATACAGTAGTCATACAAATAACAGATACTGTGGCTTTTCACGCAACTTCCTAGACAGAGGTCTACCAAAACCAATAACAGCTGAGGAAGCGGAAAGAAATGCAAAAGAGCTAGTGGATGAGGaagaaaaaattaagaaaaaagcagagaagaaaaaaatgaaaaaaatgAGACAAAAAGAGAGACGTCGCCTGGAAAAATTAGAGaaagaaaatgcaaataaagaaaaaaataaaccgGTACAAGTTGACCCTGGACCAGAAAAGACCAAACATGCAGATAAAGATAatgaaaataaagataaaaaatgtaaaaataaaggttGTTCATCTGTGCCTCCTGACCCTCAGCCCATTTCAGCCCCCGTGTCGAGCAGTGATAGCAGTAGTGATGAGGAAGACGATAAAAAGGAAGATTCTGCAATAGAACCAGAGGAGCTCGACATGAATAGCTGCTTTGTGTCAAACGCAGCTGCTATTGCCAAACGCAAACTGGAACAGAAACCTAAACCTGACAAGAAGCCTGCTCAAGCAAACCC
>TCONS_00012525
GGTTCGACGCGTTCATGTTGCACGCTGATGCGCATGCGTGCTGCTGTGAGTGAGCGCTGTGTGGTGTGTGCAAAGACTACTTCCTGCTGCAAAATGATGAGCGCCTCATGCGGACCCACGAGGCTATGGTGGATATGATCAATGATAGACCGGCAAATCGCAACATCTTAGATGCCTTAAGTTTTGGTTATAAATACGttCCAGAACTGGACCACTTTGCAGCTCAGTTTCCTGGATATGAAGATTCATCTGatgaggattattattattatgatgacgATAAATACAGTAGTCATACAAATAACAGATACTGTGGCTTTTCACGCAACTTCCTAGACAGAGGTCTACCAAAACCAATAACAGCTGAGGAAGCGGAAAGAAATGCAAAAGAGCTAGTGGATGAGGaagaaaaaattaagaaaaaagcagagaagaaaaaaatgaaaaaaatgAGACAAAAAGAGAGACGTCGCCTGGAAAAATTAGAGaaagaaaatgcaaataaagaaaaaaataaaccggT
>TCONS_00012526
ATGTTGCACGCTGATGCGCATGCGTGCTGCTGTGAGTGAGCGCTGTGTGGTGTGTGCAAAGGTGGGGAAGAATCTCGAGAAAAGAGTGCGACTGAAAGACTACTTCCTGCTGCAAAATGATGAGCGCCTCATGCGGACCCACGAGGCTATGGTGGATATGATCAATGATAGACCGGCAAATCGCAACATCTTAGATGCCTTAAGTTTTGGTTATAAATACGttCCAGAACTGGACCACTTTGCAGCTCAGTTTCCTGGATATGAAGATTCATCTGatgaggattattattattatgatgacgATAAATACAGTAGTCATACAAATAACAGATACTGTGGCTTTTCACGCAACTTCCTAGACAGAGGTCTACCAAAACCAATAACAGCTGAGGAAGCGGAAAGAAATGCAAAAGAGCTAGTGGATGAGGaagaaaaaattaagaaaaaagcagagaagaaaaaaatgaaaaaaatgAGACAAAAAGAGAGACGTCGCCTGGAAAAATTAGAGaaagaaaatgcaa
>TCONS_00012527
ATAATCGATAAATTGGAGTACGCATTGTCTGCGTTTGTTTGTTGTGCTTTTAGGAGGCTATGGTGGATATGATCAATGATAGACCGGCAAATCGCAACATCTTAGATGCCTTAAGTTTTGGTTATAAATACGttCCAGAACTGGACCACTTTGCAGCTCAGTTTCCTGGATATGAAGATTCATCTGatgaggattattattattatgatgacgATAAATACAGTAGTCATACAAATAACAGATACTGTGGCTTTTCACGCAACTTCCTAGACAGAGGTCTACCAAAACCAATAACAGCTGAGGAAGCGGAAAGAAATGCAAAAGAGCTAGTGGATGAGGaagaaaaaattaagaaaaaagcagagaa
>TCONS_00012528
ataaaatagaaaacatgCGACGTATGTAAACGGCCTcagtaacaaaatataatatttgtattatgtattatttacctATCTTAACGCGTGACATTTTTCTCAGGAACCCACAGAGAAGATGAATGGGTAACATGAGCAGTGTCACTCACTTTCATAATGAATTTGCTATGGACGTTGCTATGGAACAAAAATAAACCGCTTAGTGGCGCGGGAAGAAAGACTACTTCCTGCTGCAAAATGATGAGCGCCTCATGCGGACCCACGAGGCTATGGTGGATATGATCAATGATAGACCGGCAAATCGCAACATCTTAGATGCCTTAAGTTTTGGTTATAAATACGttCCAGAACTGGACCACTTTGCAGCTCAGTTTCCTGGATATGAAGATTCATCTGatgaggattattattattatgatgac

Function

symbol description
si:dkey-33c12.4 Predicted to enable RNA binding activity and metal ion binding activity. Orthologous to human TTC31 (tetratricopeptide repeat domain 31).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2527 Predicted to enable RNA binding activity and metal ion binding activity. Orthologous to human TTC31 (tetratricopeptide repeat domain 31).

Ensembl:

ensembl_id ENSDARG00000057890

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012523 False 2764 mRNA 0.39 18 9339919 9367647
TCONS_00012524 False 640 lncRNA 0.38 5 9356089 9362323
TCONS_00013752 False 820 lncRNA 0.42 8 9356089 9367689
TCONS_00012525 False 523 processed_transcript 0.41 6 9361810 9367689
TCONS_00012526 False 524 mRNA 0.41 6 9361832 9367675
TCONS_00012527 False 367 lncRNA 0.38 3 9361988 9367041
TCONS_00012528 True 422 processed_transcript 0.39 4 9362226 9368535

Neighbor

gene id symbol gene type direction distance location
XLOC_006452 BX901922.1 coding downstream 4028 9333317 ~ 9335891 (-)
XLOC_006451 si:dkey-33c12.3 coding downstream 21028 9313777 ~ 9318891 (-)
XLOC_006450 mrps26 coding downstream 28666 9303554 ~ 9311253 (-)
XLOC_006449 HTRA2 coding downstream 39620 9288383 ~ 9300299 (-)
XLOC_006448 HTRA2 coding downstream 55509 9261815 ~ 9284410 (-)
XLOC_006454 grxcr1b coding upstream 71791 9440326 ~ 9442942 (-)
XLOC_006455 pimr152 coding upstream 78485 9447020 ~ 9450210 (-)
XLOC_006456 pimr152 coding upstream 96223 9464758 ~ 9467944 (-)
XLOC_006457 pimr152 coding upstream 124419 9492954 ~ 9496141 (-)
XLOC_006458 NA coding upstream 133232 9501767 ~ 9558425 (-)
XLOC_006338 rn7sk misc downstream 8513694 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 896206 10264741 ~ 10264905 (-)
XLOC_006437 NA non-coding downstream 563442 8760694 ~ 8776477 (-)
XLOC_006435 BX004962.2 non-coding downstream 684472 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 non-coding downstream 689868 8649711 ~ 8650051 (-)
XLOC_006428 NA non-coding downstream 1109754 8168713 ~ 8230165 (-)
XLOC_006426 NA non-coding downstream 1590718 7747111 ~ 7749201 (-)
XLOC_006467 NA non-coding upstream 708680 10077215 ~ 10118935 (-)
XLOC_006468 NA non-coding upstream 782384 10150919 ~ 10232078 (-)
XLOC_006469 NA non-coding upstream 881639 10250174 ~ 10253034 (-)
XLOC_006472 NA non-coding upstream 906751 10275286 ~ 10346890 (-)

Expression


Co-expression Network