XLOC_006458


Basic Information

Item Value
gene id XLOC_006458
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9501767 ~ 9558425 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013753
ATCTTGAGAAAATTGTTTATTAAAGGCTTTGAAAATACAGAGAACAAAAGTATGCAAAAGTTCAGTAGTTTAAATGATAATCGCTCTCCTGTTAAGCTAAAACTAGGATCACTACACATAATCAGTCACTGCATCAGTTTTATATTCGATCAGCTGAAAAGATCTGTTATGAGGTATAGTTGTGAAAAACAGCTTAATCAGCAGACTGTAAGTATATGGAGCTGATCATCCAAAACCCTGAGATGCTGCATCTCATCCAAGCTGGATGTTGTTGTCATGTTTGCTGCATATTGTTATCAGTGCCACACAACTACAACTAAACCCACTGCACTGCTTCAGTGTCAGTAACTTCAAGacttagttcactcaaaaatcatCATTCTGTCATAACTTACTCAGCCACATTCCAAGCTTTTATATACTGCAcgctaaaaaatgctgggttccacatactTCCTTGTCCCATCAcaaatcaattagggtaacttgattgtttttataaatgtaagtgagttgaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013753 True 518 lncRNA 0.36 2 9501767 9558425

Neighbor

gene id symbol gene type direction distance location
XLOC_006457 pimr152 coding downstream 5626 9492954 ~ 9496141 (-)
XLOC_006456 pimr152 coding downstream 33823 9464758 ~ 9467944 (-)
XLOC_006455 pimr152 coding downstream 51557 9447020 ~ 9450210 (-)
XLOC_006454 grxcr1b coding downstream 58825 9440326 ~ 9442942 (-)
XLOC_006453 si:dkey-33c12.4 coding downstream 133232 9339919 ~ 9368535 (-)
XLOC_006462 cpxm1a coding upstream 17091 9575516 ~ 9608943 (-)
XLOC_006463 sfxn4 coding upstream 272585 9831010 ~ 9841806 (-)
XLOC_006464 tm9sf3 coding upstream 296955 9855380 ~ 9875538 (-)
XLOC_006465 si:ch211-117n7.7 coding upstream 320119 9878544 ~ 9886579 (-)
XLOC_006466 si:ch211-117n7.6 coding upstream 331251 9889676 ~ 9895628 (-)
XLOC_006338 rn7sk misc downstream 8675542 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 706316 10264741 ~ 10264905 (-)
XLOC_006437 NA non-coding downstream 725290 8760694 ~ 8776477 (-)
XLOC_006435 BX004962.2 non-coding downstream 846320 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 non-coding downstream 851716 8649711 ~ 8650051 (-)
XLOC_006428 NA non-coding downstream 1271602 8168713 ~ 8230165 (-)
XLOC_006426 NA non-coding downstream 1752566 7747111 ~ 7749201 (-)
XLOC_006467 NA non-coding upstream 518790 10077215 ~ 10118935 (-)
XLOC_006468 NA non-coding upstream 592494 10150919 ~ 10232078 (-)
XLOC_006469 NA non-coding upstream 691749 10250174 ~ 10253034 (-)
XLOC_006472 NA non-coding upstream 716861 10275286 ~ 10346890 (-)
XLOC_006476 AL928999.1 non-coding upstream 1354061 10912486 ~ 10912602 (-)

Expression


Co-expression Network