XLOC_006462 (cpxm1a)


Basic Information

Item Value
gene id XLOC_006462
gene name cpxm1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9575516 ~ 9608943 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012537
CGGCGGCAGTAAGGTATTATGTTACGGGGCGTTCTTTCAATATATGACTTTTAAATTCTGCTTGAAGACTTGGACACGAATATAGGTTATTGGGGAAGAAAAAATGCTTAAGCAGAACGTGCACATTTGTGCTGCAATAATAGTTTGCATTGCACGCAGCTGTTTTTCATTTGAAAATCAGACTGTTAATAATACTGTGACTAAAACTGAATCCAATGATTTGAAGTCAATATTTAATCAGACTGGAAATGTTACTAAAAGTTTTGAGTCAGCTCAGAGGAGAAACAGCAGTGAAGATGGAGAACAGATGAACAAAGAGAGCCGTGGAGCAAAACCAGATTGTCCACCGCTGGGTTTGGAGTCTCTGAAAGTCTCTGATGATCAGCTGCAGTGCTCCTCATATCTGAGCGTTGGGCTCGGGCCTCACAGAGGACGCCTCAATATACAGtctGGTCTTGAGGATGATGATGAGTATGATGGAGCATGGTGTGCCGGTGAGGAGGATCAGGAACAGTGGTTGCAGCTGGATTCTCTCAGACTGACACTCTTTACCGGTGTCATCCTGCAGGGTAGAAACTCAATCTGGAGCTTGAACTGGGTTCGCACATATAAAGTTCAGTTCAGTAATGACTCAGTGGACTGGCAGCCCTGCATGAATGGATCACAGGAGGCCGTTTTTGTTGGGAATCAAGACTTAGAGACGCCGGTTTTGGCTCTGTTTCCCGAGCCCTCGGTGGCGCAGTTCATTCGCATCAACCCTCAAACCTGGTTTAGCAACGGCACCATTTGCCTCCGGGCTGAAGTGCTGGGATGCCCAGTTGCAGATCCTGACAGTCCAGTTGATCCTCAGACTGAGAGAGCATCTTTAGATAACCTCGACTTCAGACACCATAATTACAATGAGATGAGGAAGCTGATGAAGTCTGTCAGTGACGAGTGTCCAGAAATCACACGGATCTACACTATTGGCAGAAGTTACACTGGACTCAAGCTTTATGTTATGGAAATATCTGATAACCCAGGAAAACATGAGCTTGGTGAGCCAGAATTTCGCTATGTTGCCGGGATGCATGGAAATGAAGTTTTGGGACGCGAGCTCCTGCTAAACCTTATGCAGTACATCTGTCATGAATACAAACGTGGCAATCAGCGAATCATAAAGCTGGTGAAGGACACACGCATCCACCTACTGCCATCTATGAACCCAGACGGCTATGAAACAGCATATGAGAAGGGCTCAGAACTGTCTGGCTGGGCTCTTGGACGCTACAGTTTCGAGGGTATTGATATGAATCACAACTTTCCTGACCTCAACAACATCATGTGGGATGCTCAGGATCTGGCTACAGATAGAAAGAGAGTGAGCAACCACTACATTCCCATGCCAGAGTATTACACCTCCACTGATGCAATGGTTGCCCCAGAGACACGCGCTGTAATCAGCTGGATGCAGGATATCCCGTTTGTACTGAGTGCCAATCTGCATGGTGGAGAGCTGGTGGTTACTTATCCTTTCGATGGTACACGTGATTGGATCCCCCGTGAGGACACGCCCACAGCAGACAACGATTTTTTCCGCTGGTTGGCTACAGTCTATGCCACCACCAACCTGGTGTTGGCAAACCCAGAGCGCAGGATGTGCCACTCTGAAGACTTCCAGCAGCACAACAACATCATCAACGGGGCTAACTGGCACACTGTTCCAGGCAGTATGAATGACTTCAGTTACCTCCACACAAACTGTTTTGAAATAACGGTTGAGCTGTCGTGCGATAAGTTTCCTCACGCCAGCGAGCTTCCCGTGGAGTGGGAGAGCAATAAAGAGTCTCTGCTGCTGTACATGGAGCAGGTGCACAGAGGAATAAAGGGCGTCATCAGTGACAAGGACACTAAAGCTGGCATCGCTAATGCTGTCATTAAGGTGGATGGACTGGACCACGACATTAGATCAGCTGTAGATGGGGATTACTGGCGCTTGCTGAACCCAGGCGACTATAAGATCACGGTGTGGGCTGAAGGATACTTCCCTCGCATCCGCCACTGCTCTGTAGGGTCTGAGCCGCAGGCCACCATCTGTGACTTCACCCTCACCAAGACATCCCAAGACCGTCTGAAGCAGATCCTGGCCAGGGGTGGGAAGTTGCCTCGGGATAACCAGGTACGAATCCGAGCCATGCGGATGCGCAAACTCCGAGCCAGCACCAAGATCCTGAACCGCCGGCGAGAACAGCAGCAGCGTCTTAACAAAGTTAACCGCAAGTGATTTATGAAACTGAGTCGGTCTGTCGCAGGTTGAGAGACATTGTGTCAATCATTGaatgtgtttcttttttattaccgTTAATACAGAATTCTGAAGATGCCTCATATGTGAACGAGACTCTGAGTTTGTAGCTGGTTTTCTACACTCAGAATGTGATGATATTGTAATAAATTGAattcaatattttacaaaaa
>TCONS_00012538
TTTTTTGAGAGTGTATCATTGAACATGTTTCTCATGGTCACTTTGCATGCTGTAGTTGTAGTTTACTGAATACTCAAGTTAAAGTTCAGTTTGACAAAAGCCGTCTTTGTGTGCAGATCCTGACAGTCCAGTTGATCCTCAGACTGAGAGAGCATCTTTAGATAACCTCGACTTCAGACACCATAATTACAATGAGATGAGGAAGGTTAGCACTCATCTCAGCTTTCATTATCTTATTTTCAAAATACTGAGGTATAAGAGAACTGACCCCATTCTTGATCTCTGTCCAGCTGATGAAGTCTGTCAGTGACGAGTGTCCAGAAATCACACGGATCTACACTATTGGCAGAAGTTACACTGGACTCAAGCTTTATGTTATGGAAATATCTGATAACCCAGGAAAACATGAGCTTGGTGAGCCAGAATTTCGCTATGTTGCCGGGATGCATGGAAATGAAGTTTTGGGACGCGAGCTCCTGCTAAACCTTATGCAGTACATCTGTCATGAATACAAACGTGGCAATCAGCGAATCATAAAGCTGGTGAAGGACACACGCATCCACCTACTGCCATCTATGAACCCAGACGGCTATGAAACAGCATATGAGAAGGGCTCAGAACTGTCTGGCTGGGCTCTTGGACGCTACAGTTTCGAGGGTATTGATATGAATCACAACTTTCCTGACCTCAACAACATCATGTGGGATGCTCAGGATCTGGCTACAGATAGAAAGAGAGTGAGCAACCACTACATTCCCATGCCAGAGTATTACACCTCCACTGATGCAATGGTTGCCCCAGAGACACGCGCTGTAATCAGCTGGATGCAGGATATCCCGTTTGTACTGAGTGCCAATCTGCATGGTGGAGAGCTGGTGGTTACTTATCCTTTCGATGGTACACGTGATTGGATCCCCCGTGAGGACACGCCCACAGCAGACAACGATTTTTTCCGCTGGTTGGCTACAGTCTATGCCACCACCAACCTGGTGTTGGCAAACCCAGAGCGCAGGATGTGCCACTCTGAAGACTTCCAGCAGCACAACAACATCATCAACGGGGCTAACTGGCACACTGTTCCAGGCAGTATGAATGACTTCAGTTACCTCCACACAAACTGTTTTGAAATAACGGTTGAGCTGTCGTGCGATAAGTTTCCTCACGCCAGCGAGCTTCCCGTGGAGTGGGAGAGCAATAAAGAGTCTCTGCTGCTGTACATGGAGCAGGTGCACAGAGGAATAAAGGGCGTCATCAGTGACAAGGACACTAAAGCTGGCATCGCTAATGCTGTCATTAAGGTGGATGGACTGGACCACGACATTAGATCAGGTACACCTCTAAACGTCTCTCTCTCAAATAAACTGCATGTCTTGATGTTTACTTTTGTCCTCAAGAAGTACATGTTCTGTTAA

Function

symbol description
cpxm1a Predicted to enable metallocarboxypeptidase activity. Predicted to be involved in peptide metabolic process and protein processing. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space. Orthologous to human CPXM1 (carboxypeptidase X, M14 family member 1).

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0006508 proteolysis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0005615 extracellular space cellular_component
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5284 Predicted to enable metallocarboxypeptidase activity. Predicted to be involved in peptide metabolic process and protein processing. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space. Orthologous to human CPXM1 (carboxypeptidase X, M14 family member 1).

Ensembl:

ensembl_id ENSDARG00000073716

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012537 False 2457 mRNA 0.48 13 9575516 9608943
TCONS_00012538 True 1412 mRNA 0.46 6 9581294 9598320

Neighbor

gene id symbol gene type direction distance location
XLOC_006458 NA coding downstream 17091 9501767 ~ 9558425 (-)
XLOC_006461 pimr152 coding downstream 29150 9543180 ~ 9546366 (-)
XLOC_006460 CR848040.3 coding downstream 49989 9524382 ~ 9525527 (-)
XLOC_006459 pimr152 coding downstream 54511 9517816 ~ 9521005 (-)
XLOC_006457 pimr152 coding downstream 79375 9492954 ~ 9496141 (-)
XLOC_006463 sfxn4 coding upstream 222067 9831010 ~ 9841806 (-)
XLOC_006464 tm9sf3 coding upstream 246437 9855380 ~ 9875538 (-)
XLOC_006465 si:ch211-117n7.7 coding upstream 269601 9878544 ~ 9886579 (-)
XLOC_006466 si:ch211-117n7.6 coding upstream 280733 9889676 ~ 9895628 (-)
XLOC_006467 NA coding upstream 468272 10077215 ~ 10118935 (-)
XLOC_006338 rn7sk misc downstream 8749291 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 655798 10264741 ~ 10264905 (-)
XLOC_006437 NA non-coding downstream 799039 8760694 ~ 8776477 (-)
XLOC_006435 BX004962.2 non-coding downstream 920069 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 non-coding downstream 925465 8649711 ~ 8650051 (-)
XLOC_006428 NA non-coding downstream 1345351 8168713 ~ 8230165 (-)
XLOC_006468 NA non-coding upstream 541976 10150919 ~ 10232078 (-)
XLOC_006469 NA non-coding upstream 641231 10250174 ~ 10253034 (-)
XLOC_006472 NA non-coding upstream 666343 10275286 ~ 10346890 (-)
XLOC_006476 AL928999.1 non-coding upstream 1303543 10912486 ~ 10912602 (-)

Expression


Co-expression Network