XLOC_006463 (sfxn4)


Basic Information

Item Value
gene id XLOC_006463
gene name sfxn4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9831010 ~ 9841806 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012539
AATTGGATGATGTGTGAGCACGTGACATGCGGAAGCATCTCAGGCTCAAGCATGTCTCTCCTGCATGACCTACACAAGCAAGCTTAAATAACCAGAATATGACTAATTAATTTGTATAGAGCACtcattaaataactaaaatggACCCCAACTTACAGTACTGGCAAAACAATGGACAGTCTTTTCTGAGCAGACTGGGTCTCTGGTCAAAAATCCTCGACCCCACTTTACTGTTATCACAGGCTGAAATAGAGGAGGCCCGGACGCTTATTCAAAATGAGGAAAATACACCGGGGAAAAATGATAAAGTCTCTAACGCCTGGTTACTGTCTCTTTCATCGGTCCATAGCGATACCGGAGCTGTAATTTCACCAGCATATCGTCCTCAAGTTTTTCTGCCTATTTCTGCCCCCTTGGTTGTTGGGAGTTTAATAGCCCACAAAGGCATCAAATCTGCAATGTTTTGGCAATTTGTGCTCCACACATACTGTGCAGGATTCAATCATGCTAACAGAAATGCAACTGCAACTAAGgATAACAAAACCACAATGAAGCAGTCCCTTCTCATACTTGGAGCTGTTTCCTACTCAACAGTTACAGGAGCTCTTCCTCAAATTATACTCCAGCGTTTGAGACTCATCAGTTCTTTGACTCAGACCATCTGTAGGTCATTTTTGCCTGTTCCTCTCGCAGCTGGTCTAGCTGCGTTTAACATATTGGTGGTGAGAAGCGAAGAGGCCGAAAATGGAATAAGCTTGTTTGATGCTAATGGTAATGCTGTCGGAGTGTCAAAGGAAGCTGGTTTCAAGGCTGTTAAGGAAACGGCCATCTCAAGAGCGACTCTCTTTGGCACCACTGCAGCTCTTCCTACTTTTCTGATGGCTCTCTTAGAAAGGGCCAAGTTTGTCCAAAGGAACCCAAGGTTAATCGCTCCAATTGGGAGCATGTGTACTGTCATTACTTTTGGCCTGATGATCCCTGTGTCTTTCAGTCTTTTTCCGCAGCTGGGCAAGATAAAGAAGGAGAATTTAGAAAAGGAGTTTCAGTCACTTGACGGTAACGAGGAGCTGTTTTATCACAGAGGATTGTAAAGCTGACATTGTGAACTTGCCTATTTGAGGGTGACTATTGTTGACATTTTGCAGACACAaagtttcaataaaaataatagagtATACGAAA

Function

symbol description
sfxn4 Predicted to enable transmembrane transporter activity. Acts upstream of or within cellular respiration and erythrocyte differentiation. Located in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 18. Orthologous to human SFXN4 (sideroflexin 4).

GO:

id name namespace
GO:0030218 erythrocyte differentiation biological_process
GO:0055085 transmembrane transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0045333 cellular respiration biological_process
GO:0006865 amino acid transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050309-187 Predicted to enable transmembrane transporter activity. Acts upstream of or within cellular respiration and erythrocyte differentiation. Located in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 18. Orthologous to human SFXN4 (sideroflexin 4).

Ensembl:

ensembl_id ENSDARG00000069832

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012539 True 1182 mRNA 0.43 14 9831010 9841806

Neighbor

gene id symbol gene type direction distance location
XLOC_006462 cpxm1a coding downstream 222067 9575516 ~ 9608943 (-)
XLOC_006458 NA coding downstream 272585 9501767 ~ 9558425 (-)
XLOC_006461 pimr152 coding downstream 284644 9543180 ~ 9546366 (-)
XLOC_006460 CR848040.3 coding downstream 305483 9524382 ~ 9525527 (-)
XLOC_006459 pimr152 coding downstream 310005 9517816 ~ 9521005 (-)
XLOC_006464 tm9sf3 coding upstream 13574 9855380 ~ 9875538 (-)
XLOC_006465 si:ch211-117n7.7 coding upstream 36738 9878544 ~ 9886579 (-)
XLOC_006466 si:ch211-117n7.6 coding upstream 47870 9889676 ~ 9895628 (-)
XLOC_006467 NA coding upstream 235409 10077215 ~ 10118935 (-)
XLOC_006468 NA coding upstream 309113 10150919 ~ 10232078 (-)
XLOC_006338 rn7sk misc downstream 9004785 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 422935 10264741 ~ 10264905 (-)
XLOC_006437 NA non-coding downstream 1054533 8760694 ~ 8776477 (-)
XLOC_006435 BX004962.2 non-coding downstream 1175563 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 non-coding downstream 1180959 8649711 ~ 8650051 (-)
XLOC_006428 NA non-coding downstream 1600845 8168713 ~ 8230165 (-)
XLOC_006469 NA non-coding upstream 408368 10250174 ~ 10253034 (-)
XLOC_006472 NA non-coding upstream 433480 10275286 ~ 10346890 (-)
XLOC_006476 AL928999.1 non-coding upstream 1070680 10912486 ~ 10912602 (-)

Expression


Co-expression Network