XLOC_006466 (si:ch211-117n7.6)


Basic Information

Item Value
gene id XLOC_006466
gene name si:ch211-117n7.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9889676 ~ 9895628 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012545
TTGTCAAATATTGGCAGTTTGTAAGTAACTTTGAATAGGTTCAGAGTCTTGCTTGCTCCTCAAAATGAAGCGAAGAGTCGATAAATCCGAAGGTGGTGAACCTGCTACAGGACTGCAAAAGTCTAGTCTGACACTTAAGGATGTGCATGCAAGCTCTCACTGGTCATGGGCTAAAATAGGACTTATTTCTTTCCTCGTCCTCTGTGCAACAATTCCAACTCTTCAACATGTCCTCTCTGattttgttgACCTCAGCCATCCTTTAGATGTGGGTCTCAATCACACTATTAATGTCTATCTCAAACCTGAGGAGGGTGTGAGAGTGGGCGTGTGGCATACAGTACCTGAACATAGGTGGAAGGAGGCGCAGGGTAAGAATGCAGAGTGGTATGAGAAGGCTCTAGGGGATGGATCACCAATTTTCATCTACCTACATGGCAATGGGGGCAATAGATCTGCACTTCATCGTATTGGAGTTGCAAATGTCTTAAGTGCTCTTGGATATCATGTCTTGGTGATGGACTACAGAGgttttggagactcGACTGGTGAACCTACAGAGCCCGGACTGACTACTGATGCTCTATACCTGTATAACTGGATTAAGAAGCGCAGTGGAAACAGcctggtgtgtgtgtggggtcaCTCGATTGGTAGTGGTGTAACAACTAACGTTGCAGTTAAATTACTGGAGGAagGAAAAAAGTTTGACGGAATAATACTCGAGGGTGCAATGCTAAGTGGGCGAGCGGCAGCCAAACAATATGGACATCCTTTTTCCTGGtttTATTGGAAGTTCCCATATATTCAGTTCTTCCTCTTCAATCCactgaaaaacaacaaaatagtCTTTCCATTGGATGAAAATTTGGAAAAAATCAGAACTCCGATTTTAATTCTCCATTCCAAAGACGACCATGTGTCACCCTTCAGTGTGGCTCAGGAGATTTACAGAATTGCAAAAAAGGCTCAGAACTCAGATGAACGAGTCAAGCTGGTGCTATTTGATGGAAAACATGGATATCTTCATAATGGGCTTTATAGAGATCATCGTTTGCCAAATATGTTAAGGGAGTTTGTGCAGTCACTGACGGCATGAGGCACAATGTGGGAGGAGGATGTTTTCAtatcataatataaataatattcagCTACTGCAAACTGCTTTTTATTATAGTTGGTGTTGTAAATAAGTTTgcaatagttttaaaacaca
>TCONS_00012546
ATGAAGCGAAGAGTCGATAAATCCGAAGGTGGTGAACCTGCTACAGGACTGCAAAAGTCTAGTCTGACACTTAAGGATGTGCATGCAAGCTCTCACTGGTCATGGGCTAAAATAGGACTTATTTCTTTCCTCGTCCTCTGTGCAACAATTCCAACTCTTCAACATGTCCTCTCTGattttgttgACCTCAGCCATCCTTTAGATGTGGGTCTCAATCACACTATTAATGTCTATCTCAAACCTGAGGAGGGTGTGAGAGTGGGCGTGTGGCATACAGTACCTGAACATAGGTGGAAGGAGGCGCAGGGTAAGAATGCAGAGTGGTATGAGAAGGCTCTAGGGGATGGATCACCAATTTTCATCTACCTACATGGCAATGGGGGCAATAGATCTGCACTTCATCGTATTGGAGTTGCAAATGTCTTAAGTGCTCTTGGATATCATGTCTTGGTGATGGACTACAGAGgttttggagactcGACTGGTGAACCTACAGAGCCCGGACTGACTACTGATGCTCTATACCTGTATAACTGGATTAAGAAGCGCAGTGGAAACAGcctggtgtgtgtgtggggtcaCTCGATTGGTAGTGGTGTAACAACTAACGTTGCAGTTAAATTACTGGAGGAagGAAAAAAGTTTGACGGAATAATACTCGAGGGTGCAATGCTAAGTGGGCGAGCGGCAGCCAAACAATATGGACATCCTTTTTCCTGGtttTATTGGAAGTTCCCATATATTCAGTTCTTCCTCTTCAATCCactgaaaaacaacaaaatagtCTTTCCATTGGATGAAAATTTGGAAAAAATCAGAACTCCGATTTTAATTCTCCATTCCAAAGACGACCATGTGTCACCCTTCAGTGTGGCTCAGGAGGTTTGGAAgattaatttactgttttttgttaaaattgatttatttattttaatctttaaatgcTTGTTTGGGGGGCTCAGATTTACAGAATTGCAAAAAAGGCTCAGAACTCAGATGAACGAGTCAAGCTGGTGCTATTTGATGGAAAACATGGATATCTTCATAATGGGCTTTATAGAGATCATCGTTTGCCAAATATGTTAA

Function

symbol description
si:ch211-117n7.6 Predicted to enable acylglycerol lipase activity; lysophospholipase activity; and palmitoyl-(protein) hydrolase activity. Predicted to be involved in monoacylglycerol catabolic process and phosphatidylserine catabolic process. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human ABHD12B (abhydrolase domain containing 12B).

GO:

id name namespace
GO:0052651 monoacylglycerol catabolic process biological_process
GO:0006660 phosphatidylserine catabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0047372 acylglycerol lipase activity molecular_function
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function
GO:0004622 lysophospholipase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-474 Predicted to enable acylglycerol lipase activity; lysophospholipase activity; and palmitoyl-(protein) hydrolase activity. Predicted to be involved in monoacylglycerol catabolic process and phosphatidylserine catabolic process. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human ABHD12B (abhydrolase domain containing 12B).

Ensembl:

ensembl_id ENSDARG00000092071

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012545 False 1216 mRNA 0.42 13 9889676 9895628
TCONS_00012546 True 1086 mRNA 0.42 11 9890033 9895564

Neighbor

gene id symbol gene type direction distance location
XLOC_006465 si:ch211-117n7.7 coding downstream 3097 9878544 ~ 9886579 (-)
XLOC_006464 tm9sf3 coding downstream 14138 9855380 ~ 9875538 (-)
XLOC_006463 sfxn4 coding downstream 47870 9831010 ~ 9841806 (-)
XLOC_006462 cpxm1a coding downstream 280733 9575516 ~ 9608943 (-)
XLOC_006461 pimr152 coding downstream 343310 9543180 ~ 9546366 (-)
XLOC_006467 NA coding upstream 181587 10077215 ~ 10118935 (-)
XLOC_006468 NA coding upstream 255291 10150919 ~ 10232078 (-)
XLOC_006469 NA coding upstream 354546 10250174 ~ 10253034 (-)
XLOC_006470 six3a coding upstream 362379 10258007 ~ 10261383 (-)
XLOC_006472 NA coding upstream 379658 10275286 ~ 10346890 (-)
XLOC_006338 rn7sk misc downstream 9063451 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 369113 10264741 ~ 10264905 (-)
XLOC_006458 NA non-coding downstream 331251 9501767 ~ 9558425 (-)
XLOC_006437 NA non-coding downstream 1113199 8760694 ~ 8776477 (-)
XLOC_006435 BX004962.2 non-coding downstream 1234229 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 non-coding downstream 1239625 8649711 ~ 8650051 (-)
XLOC_006428 NA non-coding downstream 1659511 8168713 ~ 8230165 (-)
XLOC_006476 AL928999.1 non-coding upstream 1016858 10912486 ~ 10912602 (-)

Expression


Co-expression Network