XLOC_006480


Basic Information

Item Value
gene id XLOC_006480
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 11442838 ~ 11445780 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013762
caggggGAGGGGTTGGTCTTCATACAAGCTGCTGCACATTTTCCCAGGTCCAACCCACGCCTTTACTGGAGCACCAGCCAGACATTAAAGCAGCATCTACactcacgctcacacacacacacacacacacgctcactcactcacactcatccGGACACTATACTCAATCCACAGACCTCACGCACTGGAAAACATGTTTCCACCCACACCAGCATCTACAGTAAATAAGATTATTGAACTGAATGCAGAAACACAAACAGCGTCTCACCAATCTGCACGTCGTCACCGCTCTGGCAATCCCGCCAGAAGTTTCTGACaggaaagaaaataataaataaactggcACAGAGAGGTTAAGGTTCTTATAATTTATTGCAGTTTGCACACAATTTAAAAATTTCACCAACAGCACACCAAAAGTACAAAACTAAACAGCCTCATAATTTACTTCCCTTGAGAAAATGAAACGTACTATGATTGTCAAAGCTAAATGTCTAAATCCATAAAAAGAACAATGTCAACATAGCAAAAAAATCTCAGAAGGGAAGCAATTACATGTGAAGTCcaatcctttttattttattttatcattttttttaaattccagaCAGCGATTGTCTCTGAATTTACCATATATTTTCTTCTTTCCCGTTTGATTTTGACAAACAACTGTTCTTCACACTGGGTTCCTGGGTTCAAGTAAACTAAAGGGGTGTCTAATTTATGGATATGCTTCATAGGCCATTTCACAGCTTCATTTCCATTGaacaaaagtcaaaacaaaaataaaagacatcCAGAATTCCAGCGACAGTTTCCAGTTTTCACCCTCTGAGTATAAGCTGATAACAGTAGTTTAAGGCGGTCAAGTACAACAGAAGCCAacgaaataaaataagaataaaagaaagCGTAGAAAACAAAATCAACCCCAgagttgatctttttttttttttctgtcacattGTAGAGTGCAAAAGGTAAAAGTACCACCGTGCAAAACGCCATGAGGAGCGTGCGCTGTTGGCAAAGCTCAACCTTTTCACTAGCCGTTGCACCAGCCAAATATATGGTAGGACAGTTCCTGAGGCCTGCGTAGGCCCGTGTGCCGCACACTCCTGTCCTGCCGGAAACATGTGCGGAGCCCCCCGGCCCTCTCTAACTAAAGTAGTTCAAGCATTTCAGCTCTATGTGAGTGACTGATCTACGTCTACAGTGCTAAGACATATGTTTTCTTTGCTTTTAACTTCTCCGGATTTAACAGTGAAAGTGTTTTGTGAAACAAACcgacaaacaaaataaacaatgtgtTAACATTCCTAAAATGAAACCTTAATATAATGAATTTAAAGGAAacaaaagtatacatttttaaaataaaatcacaaatgcTGCAAAAACAACTTATCAAACAATCATAAATTgatagattttttctttttttttttcagtgtaacgaAGTCAATTCGATCCTTCAGCTTTCTCCAAATAGATGTGCGCTGCTGAGGACACCCATAAAGAAGAGCTGCACCATCAGCCACGCAAATGTGTCTTCGTGGCAATCAAATCTGAAGCAAGTGCCAAttgaaaagataaataaataaattacaaacagaGCCGACATGATTCAAATGACAACAGCCAGTAAACAGGACACTGAGACGAACAGCAGTTGAGGACCCAGCACTGGAAAGAGCAGCGCGAGGAGATGCTAGCAGGAGCAACGCTAGCCTTGTGAACAATTAATGCAGCGCTTCTGCCTCTGCAGACACCTGGCCCCTCGTTAACCTCTGAATCCTACGAAATGAATCGCTTCATGTGTGTAGATACTGCAGAGCCTAATGTCAGTGCATTTCCACATTCTTCAcagcccagaaaaaaaaaaaaaacacccccgaTTCTTTCTCTAATGAGACGATAAAACTCAAATCTACCAAGGAATCGAATgagttaattaaaaaatacactctCTGATGCAAAACAACAACGAAAATAAGAGTAAGTTAAATAAAATTCATGCAATTTCTACAGCGGTAATATTAAAGGTACTTTTTTTCTCAACAGACAGGTGCCCTGACTGCAATGAATCAGTCAATTACAGTGTACAGCAATACAGCAAGTCACATCTTTTTCAATATACAGGTCAGACATCATGCAACAACAGATTCcgttttaaaaacgaaaaaagTCTCAATAAAACACTACAGAAATCTCTAGAAATGCAGCTGATGTAAAAACCAACCTCAGTAGCAAACGAGCGCAACTAAAATGCCAAAACGACTTCAAATCATATTAAGGAAGGATagagagaaataataataataataatgcagcaACTGATGTGAAAAAGGAGGCTGTACATTGCATGAGTGCCTTGTTTGTCTTC
>TCONS_00013763
TAACCAATTCACATTGTTTATGCTGTACACAAATCAACAAGCCACGTTTCCTTctttcataataataaaacagcagGAAAAAGATCTTCAACTCAAAATGCATTCAAAAGCTAAATCTTGCAATTAgaagttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaaggggGGCAGGCTTACAGCACAGGACCATCTGTGGAAGTGGCCTGTTGAGCAACGCTCACTGACTTAAAAGTGGTCAGCCTTTAGTGCATCTGTAGGCCAGGTTTGCCGAACAGCGAGACATTAGATAAAGCTGATTTGTTTGCTGGAAAACTGTACTTGAGGAGCTTTGGAAGCAGctcatatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcaggggGAGGGGTTGGTCTTCATACAAGCTGCTGCACATTTTCCCAGGTCCAACCCACGCCTTTACTGGAGCACCAGCCAGACATTAAAGCAGCATCTACactcacgctcacacacacacacacacacacgctcactcactcacactcatccGGACACTATACTCAATCCACAGACCTCACGCACTGGAAAACATGTTTCCACCCACACCAGCATCTACAGTAAATAAGATTATTGAACTGAATGCAGAAACACAAACAGCGTCTCACCAATCTGCACGTCGTCACCGCTCTGGCAATCCCGCCAGAAGTTTCTGACaggaaagaaaataataaataaactggcACAGAGAGGTTAAGGTTCTTATAATTTATTGCAGTTTGCACACAATTTAAAAATTTCACCAACAGCACACCAAAAGTACAAAACTAAACAGCCTCATAATTTACTTCCCTTGAGAAAATGAAACGTACTATGATTGTCAAAGCTAAATGTCTAAATCCATAAAAAGAACAATGTCAACATAGCAAAAAAATCTCAGAAGGGAAGCAATTACATGTGAAGTCcaatcctttttattttattttatcattttttttaaattccagaCAGCGATTGTCTCTGAATTTACCATATATTTTCTTCTTTCCCGTTTGATTTTGACAAACAACTGTTCTTCACACTGGGTTCCTGGGTTCAAGTAAACTAAAGGGGTTGAAAGTGTTTTGTGAAACAAACcgacaaacaaaataaacaatgtgtTAACATTCCTAAAATGAAACCTTAATATAATGAATTTAAAGGAAacaaaagtatacatttttaaaataaaatcacaaatgcTGCAAAAACAACTTATCAAACAATCATAAATTgatagattttttctttttttttttcagtgtaacgaAGTCAATTCGGTTAATAATTAGGCGTATACATTTCATAAAGGCCTCTTTTGCACATCATTCTAATTTCATCCACTTCAAAGGTGCGACCAACCTCGCCGTTCAAGTgacggttaaaaaaaaacaaaaacaacacaaacacacgcacacaaaccaCTCGAGCTTTATGCTGTTTAAAGATCCTTCAGCTTTCTCCAAATAGATGTGCGCTGCTGAGGACACCCATAAAGAAGAGCTGCACCATCAGCCACGCAAATGTGTCTTCGTGGCAATCAAATCTGAAGCAAGTGCCAAttgaaaagataaataaataaattacaaacagaGCCGACATGATTCAAATGACAACAGCCAGTAAACAGGACACTGAGACGAACAGCAGTTGAGGACCCAGCACTGGAAAGAGCAGCGCGAGGAGATGCTAGCAGGAGCAACGCTAGCCTTGTGAACAATTAATGCAGCGCTTCTGCCTCTGCAGACACCTGGCCCCTCGTTAACCTCTGAATCCTACGAAATGAATCGCTTCATGTGTGTAGATACTGCAGAGCCTAATGTCAGTGCATTTCCACATTCTTCAcagcccagaaaaaaaaaaaaaacacccccgaTTCTTTCTCTAATGAGACGATAAAACTCAAATCTACCAAGGAATCGAATgagttaattaaaaaatacactctCTGATGCAAAACAACAACGAAAATAAGAGTAAGTTAAATAAAATTCATGCAATTTCTACAGCGGTAATATTAAAGGTACTTTTTTTCTCAACAGACAGGTGCCCTGACTGCAATGAATCAGTCAATTACAGTGTACAGCAATACAGCAAGTCACATCTTTTTCAATATACAGGTCAGACATCATGCAACAACAGATTCcgttttaaaaacgaaaaaagTCTCAATAAAACACTACAGAAATCTCTAGAAATGCAGCTGATGTAAAAACCAACCTCAGTAGCAAACGAGCGCAACTAAAATGCCAAAACGACTTCAAATCATATTAAGGAAGGATagagagaaataataataataataatgcagcaACTGATGTGAAAAAGGAGGCTGTACATTGCATGAGTGCCTTGTTTGTCTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013762 False 2386 lncRNA 0.39 2 11442838 11445390
TCONS_00013763 True 2393 lncRNA 0.39 2 11442838 11445780

Neighbor

gene id symbol gene type direction distance location
XLOC_006479 akt3a coding downstream 64446 11175208 ~ 11378392 (-)
XLOC_006478 cep170aa coding downstream 369874 10980755 ~ 11072964 (-)
XLOC_006477 abcg8 coding downstream 497444 10926528 ~ 10945394 (-)
XLOC_006476 AL928999.1 coding downstream 530236 10912486 ~ 10912602 (-)
XLOC_006475 ppm1ba coding downstream 711513 10682427 ~ 10731325 (-)
XLOC_006481 adss2 coding upstream 44173 11489953 ~ 11536951 (-)
XLOC_006482 CR556710.1 coding upstream 119956 11565736 ~ 11565863 (-)
XLOC_006483 si:ch211-132e22.4 coding upstream 131627 11577407 ~ 11578304 (-)
XLOC_006484 dctn1b coding upstream 136162 11581942 ~ 11667661 (-)
XLOC_006485 CR559945.2 coding upstream 225187 11670967 ~ 11671690 (-)
XLOC_006471 BX537274.2 misc downstream 1177933 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 10616613 825904 ~ 826225 (-)
XLOC_006472 NA non-coding downstream 1095948 10275286 ~ 10346890 (-)
XLOC_006469 NA non-coding downstream 1189804 10250174 ~ 10253034 (-)
XLOC_006468 NA non-coding downstream 1210760 10150919 ~ 10232078 (-)
XLOC_006467 NA non-coding downstream 1323903 10077215 ~ 10118935 (-)
XLOC_006492 CR792443.2 non-coding upstream 528672 11974452 ~ 11974568 (-)
XLOC_006496 CR792443.1 non-coding upstream 659998 12105778 ~ 12105894 (-)
XLOC_006497 NA non-coding upstream 671333 12117113 ~ 12118250 (-)
XLOC_006502 NA non-coding upstream 1141217 12586997 ~ 12587412 (-)

Expression


Co-expression Network