XLOC_006489 (ube2d3)


Basic Information

Item Value
gene id XLOC_006489
gene name ube2d3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 11746412 ~ 11763191 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012583
AGCTCAGACAAACTGAAAGAGAAGTGTAATACACACACATCAGCTTTACACTCACCGACAGGGATCAGGGCCTGTCCGTATTCACCCGTCTGACTGCGGTATCATTTTTAGACGCTGAATGTTAGATACAGTTTCTGCATCGTGGCATTTTTAATGGTAGTTTTTATCTAGGCAGCTGGCTAGCTCTCAGGTTAGCTCACATATCGAGAAATAGGGCGCTAGTTATTCGGGAGCCACTACACCCAGTGGGAAGATGGCGCTTAAACGAATCCAAAAGGAATTGACTGATTTGGCACGTGATCCTCCTGCACAGTGCTCAGCAGGTCCGGTGGGGGATGACGTTTTCCACTGGCAGGCAACAATCATGGGGCCGAATGAAAGTCCATATCAGGGTGGTGTGTTTTTCCTAACCATACACTTCCCAACAGATTACCCATTTAAACCACCAAAGGTTGCATTTACTACAAGAATCTACCATCCCAACATAAACAGCAATGGCAGCATCTGTCTGGATATCCTCAGGTCCCAGTGGTCACCTGCACTTACTATTTCTAAAGTTCTCCTGTCCATCTGCTCACTCTTATGTGACCCCAATCCTGACGACCCTCTTGTGCCAGAGATTGCCCGAATCTATAAAACAGACACAGAGAAATACAACAGAATAGCGCGGGAATGGACTCAGAAATATGCCATGTGATGTTGGCTGGACACATTTACAAACTGTTTGTTCTCTCATGTTTTGGACACTGTTGCAAGACCATATTTCCCCATCTGTCTCTTATGGAGGCACAAGCCCAGTTTTCTGCTGAAACGGGAATGCAGGCCCGAATGTGGCCTTTTCACACTACACAGTCCTGAGATGGACATCATCAGAAGGGAACTCAGCGTCTGTCTGTTCTCTACCAATCAGCTCTTCTCACTCCACAACACCTCATGCCTGTATGACCACAGTGTGTGTCTCTCTGAGCCGCTCGGAGAGAGAATGTCTTTAGGTTGTTCTGCTTTTTTTTTGGGGCCTTACTCCTGGAGTGCATGCAATCGCAGGAGAAAAGGTCAGATGTTGTACATCAGTGGGAGTTTGGGACCGATTCCTATATTCTGTttgattgt
>TCONS_00012584
AGACAAACTGAAAGAGAAGTGTAATACACACACATCAGCTTTACACTCACCGACAGGGATCAGGGCCTGTCCGTATTCACCCGTCTGACTGCGGTATCATTTTTAGACGCTGAATGTTAGATACAGTTTCTGCATCGTGGCATTTTTAATGGTAGTTTTTATCTAGGCAGCTGGCTAGCTCTCAGGTTAGCTCACATATCGAGAAATAGGGCGCTAGTTATTCGGGAGCCACTACACCCAGTGGGAAGATGGCGCTTAAACGAATCCAAAAGGAATTGACTGATTTGGCACGTGATCCTCCTGCACAGTGCTCAGCAGGTCCGGTGGGGGATGACGTTTTCCACTGGCAGGCAACAATCATGGGGCCGAATGAAAGTCCATATCAGGGTGGTGTGTTTTTCCTAACCATACACTTCCCAACAGATTACCCATTTAAACCACCAAAGGTTGCATTTACTACAAGAATCTACCATCCCAACATAAACAGCAATGGCAGCATCTGTCTGGATATCCTCAGGTCCCAGTGGTCACCTGCACTTACTATTTCTAAAGTTCTCCTGTCCATCTGCTCACTCTTATGTGACCCCAATCCTGACGACCCTCTTGTGCCAGAGATTGCCCGAATCTATAAAACAGACACAGAGAAGTATAATAGAATGGCAAAGGAATGGACAGAGAAATATGCCATGCTGTAGGTGAAGGGCAGCTCTTCACTGTGAACATTAGAGATACAACAGAATAGCGCGGGAATGGACTCAGAAATATGCCATGTGATGTTGGCTGGACACATTTACAAACTGTTTGTTCTCTCATGTTTTGGACACTGTTGCAAGACCATATTTCCCCATCTGTCTCTTATGGAGGCACAAGCCCAGTTTTCTGCTGAAACGGGAATGCAGGCCCGAATGTGGCCTTTTCACACTACACAGTCCTGAGATGGACATCATCAGAAGGGAACTCAGCGTCTGTCTGTTCTCTACCAATCAGCTCTTCTCACTCCACAACACCTCATGCCTGTATGACCACAGTGTGTGTCTCTCTGAGCCGCTCGGAGAGAGAATGTCTTTAGGTTGTTCTGCTTTTTTTTTGGGGCCTTACTCCTGGAGTGCATGCAATCGCAGGAGAAAAGGTCAGATGTTGTACATCAGTGGGAGTTTGGGACCGATTCCTATATTCTGTttgat

Function

symbol description
ube2d3 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein K48-linked ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in myotome. Orthologous to human UBE2D3 (ubiquitin conjugating enzyme E2 D3).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-551 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein K48-linked ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in myotome. Orthologous to human UBE2D3 (ubiquitin conjugating enzyme E2 D3).

Ensembl:

ensembl_id ENSDARG00000038473

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012583 False 1110 mRNA 0.47 7 11746412 11763191
TCONS_00012584 True 1184 mRNA 0.46 8 11746415 11763186

Neighbor

gene id symbol gene type direction distance location
XLOC_006488 manba coding downstream 2439 11714869 ~ 11743973 (-)
XLOC_006487 slc39a8 coding downstream 46882 11690277 ~ 11699530 (-)
XLOC_006486 si:ch211-195e19.1 coding downstream 66926 11674764 ~ 11679486 (-)
XLOC_006485 CR559945.2 coding downstream 74722 11670967 ~ 11671690 (-)
XLOC_006484 dctn1b coding downstream 78751 11581942 ~ 11667661 (-)
XLOC_006490 zmp:0000000662 coding upstream 4412 11767603 ~ 11800281 (-)
XLOC_006491 arl3a coding upstream 200598 11963789 ~ 11971161 (-)
XLOC_006492 CR792443.2 coding upstream 211261 11974452 ~ 11974568 (-)
XLOC_006493 npm3 coding upstream 212763 11975954 ~ 11986754 (-)
XLOC_006494 oga coding upstream 225273 11988464 ~ 12006007 (-)
XLOC_006471 BX537274.2 misc downstream 1481507 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 10920187 825904 ~ 826225 (-)
XLOC_006482 CR556710.1 non-coding downstream 180549 11565736 ~ 11565863 (-)
XLOC_006480 NA non-coding downstream 300632 11442838 ~ 11445780 (-)
XLOC_006476 AL928999.1 non-coding downstream 833810 10912486 ~ 10912602 (-)
XLOC_006472 NA non-coding downstream 1399522 10275286 ~ 10346890 (-)
XLOC_006469 NA non-coding downstream 1493378 10250174 ~ 10253034 (-)
XLOC_006496 CR792443.1 non-coding upstream 342587 12105778 ~ 12105894 (-)
XLOC_006497 NA non-coding upstream 353922 12117113 ~ 12118250 (-)
XLOC_006502 NA non-coding upstream 823806 12586997 ~ 12587412 (-)
XLOC_006507 NA non-coding upstream 985461 12748652 ~ 12756661 (-)

Expression


Co-expression Network