XLOC_006493 (npm3)


Basic Information

Item Value
gene id XLOC_006493
gene name npm3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 11975954 ~ 11986754 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012590
ttttttttttattttttttttttattgaaaatacaaaatccaAATACAACAAAATGGGATTCAACTTTACAACTTGTGTGTCATATATGGAAGgcacaacacaaaataatatacaaagatacaaatgtaatatacaaaaaacattcaAGTTAAATAAATCCAAGAGTGAAAGGAAAacgcaaaatttaaataaataaataaataaaaattaagtacaACATATATATCAACTATGGCAAGTTATATACTACAAataaattgaacatttttaagGCAATTTTGGTTTTCGTTTTAACCAGGgcatctgaaaatattttaagttcttttttaaatacaataagtaATGGAGGTGTTTTGAAATatctacatttatgaataaaatatttggctAACACAATTATCATATTTATCAAATCGTGCAAAGTAGAGCAATCTTTAGTAATTCCATATAGTACATCTTGTAATGTAAAAGTCAAACCTTCAGCATCCACGTTTTTTATTATCAACCAGTCTTGtacttttttccaaaatgattgaACGGCGCTGCAAGAGAAAAATATGTGTTCTGTGTCTTCACTAAAGTGTTTACATAAATGGCATGGTGAGTTTTCTAAGTTAAATTTTAGGTGTAAGAATCTATTAGAAGGGTatatatcattaaatattttaaattgtacttcTTTTGCCTTGGGGAGAATTGGAAATTTAAGATATGTTGTTCTAAaaaatttaacagtatttttatcCATTGAATGAAATAACCTATTTCTTAATACTTGATAAGGGAAACAAGATTGGATAATAATTTGTCTTAAATGTTTATTAGTGCAAAGTTTATTATCAAATTCAATCTCACCAGTATATAATAAGGGAAGGACTGGAGTAATCTTCGAATAGGATAGGTAActtttcattaacatttttatacCTGAGGGTATAGCATTAATAACAGTGAAAAATTGCTTTGGATGACAAGCAAATCCGTGTCTTAGAGTGAAAGTATTGTAATCTAGAATATTGCCCCTTCCATCCATTAAGTCTGTTACTgaccaaatgtttttatttaaccaTTCTTCATAAAAAATGGATTTGTTCCTGTGTAGAATATACTTGTTATTCCAAATAGGGGTATTGTGAGGtgtaaaattgtgtgtgtgcgctAGTTTCCAAGACAGCAAGACTTGTTGGTGGAATGCTGAAAGCTTCACTGGGAGTTTAGGCAAGTCAAAGTCACATCTGAGAAGAAATCGGATGCCACCTAGTTTGTTAAACAAGGCACAAGGAACAGTGTACCAGAAACTTTCAGTATTACTCAAAAACCTTTGAAGCCATTTCAGTTTTAACATAGTATTCATACTTTCAAACTCAATAATATTAAGACCACCTTCTTCATACGATTTGAtaatatcagattttttaatataatgagtTTTCTGTCTCCAAATAAAGTCATACATTTTTTGGTTACTTGTTTTTATGAATGCTGAAGAGGGAGCTAAAGCCTGAGCAGGATAAATTAGTTTTGACAGATATTCAACCTTGGATAGAAGAATTCGTCCAAAAATTGAAATATCTCTCTGCAGCCAGCAATTCAGGATACCATTAGCTTTATGTACTTTATTTTCAAAGTTTTCTTTGATGTTAATGTTTGAATCTTTTGAGATCACAATGCCTAAATATTTCACAGTTTCTTTTACTGGGATGTTAAACAGGGATAGATCTGGACTAGTGTGAAGAGCTAAAAGTtcacatttgtttaaatttaattggaGGCCAGATGCTTTATTATTCAGGAAGACTGCGCTTTTGTGTGCATGCGGATGACGTCATGATTCCTGCGACGTTTTTTGCGTACTCGTCACGTGTGTTTTGAAGACGCGACGCGACCTGCACTCATAGCACTGTGGATATTTTCCCTCTATTGAAGCGATATTAATACAGTTTGAACAGTAATGTCGTTTGTGGAGGACGAAGCGTCAGACAGTGTAGTGGACTCGCGCTCGCGGCTGGAAAGCTACGTGTTCAGTTGTGAGTTGTCTTCTGGAGTGCCATTTTACACATTTCAGGCAGATGAAGATGAAGACGTGGAGCATTTTCTCGAGCTTAGGAcgATTTGTCTGGGTGACGGTGCCAAAGAGGAGAATAACGTGGTGGAAGTGACCGCTATGAATCACCAAGGAAAGAAAATATCAGTGCCTGTAGCTAATCTCAACATTACTTGCCTGCCGATGGTAAGCCTCGGAGAGTTTGAGTTGATGGCTCCCGTCACACTGCGTCTGAAATCTGGATCTGGACCAGTGACTATCAGCGGCTTACATTTAGTTGCCACAGAGAACGAAGAGTCTGAAATatcagatgaagatgatgaagaagatgatgatgaagatgacagTGAGGAGGAATTGCCCTCAGTCAAACCAGCCAAGAAAAAGCAGAAGGTTTAAGCCTCACAAGATACGATTTGAGATCTTTGCATCAGACCTttctacatttttatacattagATTTAATGTTCTTCTATACCACGTGACTGAATGTGGTGTAGACATTAAAGCAATTTTGTACTGTCAGATGTTGAATAGAGAATGATTGAATCATCAATACAGCCAGCATCATAAACATCTCTTCATGcttggtgttttgtttttgttaaactgTTACTTAAGTGTATGTAAGTAACTGCCCCATTATACCTCCAGTTGACTCTGTTAGAGGCACTCTGGAGTTTACAGTCCTGTCACCACTGTGTCATCTAGTTGAGACACCTTTCACCTTGGCTTGATTTCCCCAAAACACACTGAAAGATGCTGCACACAGGGAAAAGCCTGTCAATCCACATCTGCCTTAAACACAAGCGTATTTTCTTCTGATCACAGTGTTGAAATGATGACGTACTTTTTTGGCAATCTGGGTTTTTAAATCTTAGTCACCATTGGAAGGACTGATATTACTTTGCATGGTGTGTTTGAGGTTGAGATCAGTCAAGGACTTgccatttttgtatttttacagatttatttacagattctgtaaataaaacttgttttagTA
>TCONS_00012591
CTGCACTCATAGCACTGTGGATATTTTCCCTCTATTGAAGCGATATTAATACAGTTTGAACAGTAATGTCGTTTGTGGAGGACGAAGCGTCAGACAGTGTAGTGGACTCGCGCTCGCGGCTGGAAAGCTACGTGTTCAGTTGTGAGTTGTCTTCTGGAGTGCCATTTTACACATTTCAGGCAGATGAAGATGAAGACGTGGAGCATTTTCTCGAGCTTAGGAcgGTAAGCCTCGGAGAGTTTGAGTTGATGGCTCCCGTCACACTGCGTCTGAAATCTGGATCTGGACCAGTGACTATCAGCGGCTTACATTTAGTTGCCACAGAGAACGAAGAGTCTGAAATatcagatgaagatgatgaagaagatgatgatgaagatgacagTGAGGAGGAATTGCCCTCAGTCAAACCAGCCAAGAAAAAGCAGAAGGTTTAAGCCTCACAAGATACGATTTGAGATCTTTGCATCAGACCTttctacatttttatacattagATTTAATGTTCTTCTATACCACGTGACTGAATGTGGTGTAGACATTAAAGCAATTTTGTACTGTCAGATGTTGAATAGAGAATGATTGAATCATCAATACAGCC

Function

symbol description
npm3 Predicted to enable GTP binding activity. Predicted to be involved in cilium assembly. Predicted to be located in nucleus. Predicted to be active in cytoplasm and microtubule cytoskeleton. Is expressed in several structures, including alar plate midbrain region; midbrain; pectoral fin bud; pectoral fin musculature; and segmental plate. Orthologous to human NPM3 (nucleophosmin/nucleoplasmin 3).

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050320-50 Predicted to enable GTP binding activity. Predicted to be involved in cilium assembly. Predicted to be located in nucleus. Predicted to be active in cytoplasm and microtubule cytoskeleton. Is expressed in several structures, including alar plate midbrain region; midbrain; pectoral fin bud; pectoral fin musculature; and segmental plate. Orthologous to human NPM3 (nucleophosmin/nucleoplasmin 3).

Ensembl:

ensembl_id ENSDARG00000103594

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012590 False 3051 mRNA 0.35 5 11975954 11986754
TCONS_00012591 True 601 mRNA 0.43 4 11976397 11984867

Neighbor

gene id symbol gene type direction distance location
XLOC_006492 CR792443.2 coding downstream 1386 11974452 ~ 11974568 (-)
XLOC_006491 arl3a coding downstream 4793 11963789 ~ 11971161 (-)
XLOC_006490 zmp:0000000662 coding downstream 175673 11767603 ~ 11800281 (-)
XLOC_006489 ube2d3 coding downstream 212763 11746412 ~ 11763191 (-)
XLOC_006488 manba coding downstream 231981 11714869 ~ 11743973 (-)
XLOC_006494 oga coding upstream 1710 11988464 ~ 12006007 (-)
XLOC_006495 pprc1 coding upstream 21150 12007904 ~ 12021566 (-)
XLOC_006496 CR792443.1 coding upstream 119024 12105778 ~ 12105894 (-)
XLOC_006497 NA coding upstream 130359 12117113 ~ 12118250 (-)
XLOC_006498 commd8 coding upstream 391320 12378074 ~ 12389748 (-)
XLOC_006471 BX537274.2 misc downstream 1711049 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 11149729 825904 ~ 826225 (-)
XLOC_006482 CR556710.1 non-coding downstream 410091 11565736 ~ 11565863 (-)
XLOC_006480 NA non-coding downstream 530174 11442838 ~ 11445780 (-)
XLOC_006476 AL928999.1 non-coding downstream 1063352 10912486 ~ 10912602 (-)
XLOC_006472 NA non-coding downstream 1629064 10275286 ~ 10346890 (-)
XLOC_006502 NA non-coding upstream 600243 12586997 ~ 12587412 (-)
XLOC_006507 NA non-coding upstream 761898 12748652 ~ 12756661 (-)
XLOC_006510 NA non-coding upstream 1600542 13587296 ~ 13590570 (-)

Expression


Co-expression Network