XLOC_006498 (commd8)


Basic Information

Item Value
gene id XLOC_006498
gene name commd8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 12378074 ~ 12389748 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012596
GGTGTCGGTAGTAAAATCTAACTGTGACAGCTCAGAAAAAGCCAGTTATACGTTAACATGTACATTTAATAGACAtgtgaaaatgtttattaataattccCAGAACGCACACAACAATGTGCAGTCTGAAGACGATTGAGAAGATGATAAAGTCACGTGACGCTTGATCAGCTGACATCACTGACGCCGAGGGAGTAGTCTGACAGCACAATGATCAAATTGCTCGAGAAATTACCGTCTGAAGAATGCCCTAAACTCATACACAGGGTGGTGGATGAGGTGTGTGGACGCAGCGGGCCGAGTAGATCAGACTACAGTGACCGCTGGAGTCTGACAGAATGGCTGGAGTTAATGAACAGTCTCTCCTCTCTCATCCGCTTTGCTGTAGGAAGGGGCTGCTCGGATCAAGAgATGCAGACACTGCTGAGTGATTTGGACCCGACACACACAGAGGCTGTTCTCCAGTGTGTGCGCTCCAGATTCGAGGAGATCCGACGGGCTTTGGTGGACAGAACCAATGGCATCTCTAGCACACAGCTACGTGACTTTAACTGGCAGTTAAAGCTGGCATTATCAAGCGACAAGCTGTCGGCTTTAAACACCCCTCTGCTAAATCTCAGTCTGGACCTGAAAGAGAACGGCATTCAGAGATCGGTGAATATAGAAATGAATAAAGAGGAGCTGCAGACTCTCATCAGTGCGCTAGAGGCGGCTAATAAGGTGGTGCTGCAGTTGAAATGACGATACCAACAAGTGCATTTCCTTACAAATGTGATTCTGTGCCATCAAACTTTCATAGAGAGGATGTCCTATCTCTGTATTAGGAGACAATATCTTTATGTGGCAGAACTGGGAACTCGTGAGGAGATAATGAACAGTTCAAAAGACTGAAGGTCTGAGGAAAAGCTCCATCAATATGAACTAGTGCTGACTCGGGAATTGCCTGTTTAGCCTTTTGAAGCTGAGGATTTTGGACAcataaagagaaagtaaataaatgtacataaatcGTGGTTTCACCCCACAAAATGTTGCATCGCATTTCTAAATAAAGTAACTAAAAACAACGCA
>TCONS_00012597
GCCGAGGGAGTAGTCTGACAGCACAATGATCAAATTGCTCGAGAAATTACCGTCTGAAGAATGCCCTAAACTCATACACAGGGTGGTGGATGAGGTGTGTGGACGCAGCGGGCCGAGTAGATCAGACTACAGTGACCGCTGGAGTCTGACAGAATGGCTGGAGTTAATGAACAGTCTCTCCTCTCTCATCCGCTTTGCTGTAGGAAGGGGCTGCTCGGATCAAGAgATGCAGACACTGCTGAGTGATTTGGACCCGACACACACAGAGGCTGTTCTCCAGTGTGTGCGCTCCAGATTCGAGGAGATCCGACGGGCTTTGGTGGACAGAACCAATGGCATCTCTAGCACACAGCTACGTGACTTTAACTGGCAGTTAAAGCTGGCATTATCAAGCGACAAGCTGTCGGCTTTAAACACCCCTCTGCTAAATCTCAGTCTGGACCTGAAAGAGAACGGCATTCAGAGATCGGTGAATATAGAAATGAATAAAGAGGAGCTGCAGACTCTCATCAGTGCGCTAGAGGCGGCTAATAAGtcaactgcctctggacttgtttcccacaattattagatggcatggcatgctgagggcacttaattgtgctcacaaactattcacgtggcctccgtttcccatGTGGTGCTGCAGTTGAAATGACGATACCAACAAGTGCATTTCCTTACAAATGTGATTCTGTGCCATCAAACTTTCATAGAGAGGATGTCCTATCTCTGTATTAGGAGACAATATCTTTATGTGGCAGAACTGGGAACTCGTGAGGAGATAATGAACAGTTCAAAAGACTGAAGGTCTGAGGAAAAGCTCCATCAATATGAACTAGTGCTG

Function

symbol description
commd8 Orthologous to human COMMD8 (COMM domain containing 8).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-061103-124 Orthologous to human COMMD8 (COMM domain containing 8).

Ensembl:

ensembl_id ENSDARG00000028201

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012596 False 1071 mRNA 0.45 5 12378074 12389748
TCONS_00012597 True 847 nonsense_mediated_decay 0.48 6 12378215 12389563

Neighbor

gene id symbol gene type direction distance location
XLOC_006497 NA coding downstream 259824 12117113 ~ 12118250 (-)
XLOC_006496 CR792443.1 coding downstream 272180 12105778 ~ 12105894 (-)
XLOC_006495 pprc1 coding downstream 356508 12007904 ~ 12021566 (-)
XLOC_006494 oga coding downstream 372067 11988464 ~ 12006007 (-)
XLOC_006493 npm3 coding downstream 391320 11975954 ~ 11986754 (-)
XLOC_006499 lamtor3 coding upstream 89516 12479264 ~ 12486076 (-)
XLOC_006500 si:dkey-20i10.7 coding upstream 99115 12488863 ~ 12494575 (-)
XLOC_006501 enpep coding upstream 153886 12543634 ~ 12581388 (-)
XLOC_006502 NA coding upstream 197249 12586997 ~ 12587412 (-)
XLOC_006503 lrit3b coding upstream 201760 12591508 ~ 12602920 (-)
XLOC_006471 BX537274.2 misc downstream 2113169 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 11551849 825904 ~ 826225 (-)
XLOC_006492 CR792443.2 non-coding downstream 403506 11974452 ~ 11974568 (-)
XLOC_006482 CR556710.1 non-coding downstream 812211 11565736 ~ 11565863 (-)
XLOC_006480 NA non-coding downstream 932294 11442838 ~ 11445780 (-)
XLOC_006507 NA non-coding upstream 358904 12748652 ~ 12756661 (-)
XLOC_006510 NA non-coding upstream 1197548 13587296 ~ 13590570 (-)
XLOC_006511 CR788322.1 non-coding upstream 1254697 13644445 ~ 13644562 (-)
XLOC_006513 CR788322.4 non-coding upstream 1280692 13670440 ~ 13670537 (-)

Expression


Co-expression Network