XLOC_000065


Basic Information

Item Value
gene id XLOC_000065
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5795013 ~ 5799092 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003020
ctttaaagtgaaataaaccaaaacaccttttttattaatgaaaaacaCAAATGTACAAATTGTGATTTTAACATAACACGTACCAAAATGTGACAAACAATTTGATGATTCATGATTGAGGAGGCAGTTTACTTACTACATTTAGATATGAGAGTTTTGGTTATAGCGTGTGCAGTGGAAtcacattatttttcatttaatacaacATTAGCTCAGCTTGAAAAATAATAGCAAACCACATAGAAGGAATAAGGtatcaaaaaaagaagaaataaaatatCATCATGCTTGTTATTTGATTTTAGTTATGCAGACCAGCATCTTGattttcataaaaatatatataggcaGAAACCAATTAAAATTTACAAATAACTAAAGtttcattcttaaaaataaatcgACCAGAAATCCTTCTAAAACAGCAGTTAATGAAGTAAAACAAgtataaaaagattaaataaaatccaaaaaaGCAGATTTTCCATAAACATCGACTGCAAAAaagcaatataaaaatattataggaattaaaATCAATTTTCCAATGACAAGACACACATAGGATTGAACACCGACTGAATATCCATACAGTAGCATGTTAAAAAAGTAACAATCAAAATTAAATCCACAAAACGTCATGTATTCTTTAATTTCTTGCTATCTATTTAACTAGAAACCCCTTCGTTCAAGAGTTAAATGTGCAAAAACATGAGTATAAAGTGGGTGCAAggatttattgtttatatattgaaGTTGGCTCTCGCCGGATCCTGTTTTGACTGGCATCACGACTTCTAATTATAACAAACAGATTATTTTATAAACCGAGGACATCAGGAAGTCTTGTTTCCAAAGCAATGATCCAACAATGTTTAACCTTAAAGAAGCGTACTGCACCTAGacggcaaaaaataaaatgaaagaaaaacaaacagcagAAATGTTAAAACCTCGACCTGAGATAAAAGAGGAGCCGCGAGGACAAAAAGTCAAAACAGTTGTTGGAGACTTTGATATGGGATCTGTTGTTTGTGTAACCTCGTCTGATTCATTGTTTTTGGGACGACTTAACAAAAATGTAGCGACTAATAAGAGAGTATTAATTTCAAAACATCAGATTTAGGACACTTTAAGATTGATTTATAGCAAAACGGAGGTGTTTCAGGGAGACAAAGTTACAGAAAAggctaaataaaaacatttagtttaaCAGAAAACGTAAACTGATTGTAAATGTCTTCACATTTCAACATCTTCCCACCATAAGGCACcccaaatataaacaaacacactctcGGAAAATGTTTTTAGGGTAAAATGAcgagaatatttaaaaatctagTCTGTAAATAATGATGAGGAGGAAGAAATGACCCTACTAGCCACGGCTGACCATCATATACACATTTGTGTGAAttaaatacatgcaaaaatgtacatacaaatatacaaacactATAGATCCTTCCTACAGCTGTATGATTCAagcttaaaggggcagttcacacaaaaatgaaaaagagCAGTTTTATTTCAGACGATCCAAGATGTAAGTGATGTTTTATTCTTTAGAAGGGCTTTATTGAAGGTTTTAGCTCATAAAATGGAAGTCCAGGTACTTTAAGAGTCATAAAAAAGACACATACAGGCAACACAAAATTAATCCTTATGATACAATAAGATCAGAAGTTAAACGATCTGTCTGCGCTATAAACTGATCACAATTCACAACATGAGTCATTATGTCATTCTGAGTCAAAGGCactcattttgttttgcctgttttgtttgactctcaaagttgtttgtttttctgctttTCAATAATATTTAGCTCCACCAAAGACCAGTTTAAGAAAAacttaaatttctgtcattatttactcttccTTTACTCGTTGAAAACCTGTACCTTCCATatacttgtttttcctactatagaagtcaaaaGTCACAGGTTTCCGcctttcttcgaaatatcttctcaaagaaactcaaataggtttcaaacaagtcaaGAAAGAGATTACAGATTACAGAACCTTCAGTTTTGGACAAACTAACCCCTTTacttctcttgttttttttttttgttgtttttattttactgtcaaAGTTGTTTGTTTTTCTGACTTTCAGGAATATTTGACTCACCAAAGACCACAGTTTCAGCAAATGTTTACAagtttctagctttcttcaaaatatcttctcaaaGAAAATtgtgtaggtttcaaacaagtgaagaaagagtaaatgatgacagaactttcagttgtggatgaactaacccttttacCTTTTGCATTTCAAGAAAATTATCCAAAGACGACAGACCAAAAAGGGGTTAGTACATCCAAAACTAGAAAATTCGGTCAACATTTACTCTcattcacttgtttaaaacctatttgagATTCTTTGAGAAGATATTTTAGctacaaacctgtaaccattgacttccaaatacttgtttttcctactaaagaaatcaacggttacaggttttcacctttcttcaaaatatgttctttttgtgttcaacagaagaaagaaactcataaatgtttggaaccacttgagggagagttaATAGGGAGTAACTCTTCATTTTTTGTCAAACTACCCCTTTATTGTTCtagttaagaagaaaaaaatgtgcattttgaaAGGTCCGAGGGTGAGAAAATAAACAGCACATTTTCAATTagtgggtgaactgaccctttaaactGGCCCTGCTGTAAAATCAAGTTGACGTCCAGATTTGAGCAATACAGAATGCTAGTTTGGAGTAAATCTTTAACAATCTTTACCTTGTTTACTTTGGAGTAATCCATGGCTGTGTCAAGCTACCATCATTAGCATTTTCTCCTCATACCGTACATCTTCCAAAAACTAGATTGGTCTCATAATTGTACAAAATTACCTTCATTTTTACACAAGCACTTCAGCATTTCAGCACCAACCTTCCTCTTTCTCCTCTAGACGGCTCCGATCATTGGGTTTTTCCGCCGAGGGTCTTGATATTGTTCATCTGTGTATGGGCTGTAGCGGTCAGGACTGGCCGTTCGGTAGTTGCCCTGGTTTAGCGCCTCATATCGCGGTGGCTCTCTGGCTCCTGGATTGGATGACGGAGGGACGTCCTGCCTCATCATCTGTTTTGCTGGGGATGAAGGGTAATGAGCGCCTGGGGTCTCTGTGGGTTTGGGTACAGGCAGACGAGGCGAGCGTGGAGGATTGTCGTAAATGGGGTTCGGGTAAAGGACAGGGTCTCTCTGATTAGACCAGTTCTGGTTTGGATATTCGTCAACAGGCTTCTTCCTGGAGA
>TCONS_00003021
acaccttttttattaatgaaaaacaCAAATGTACAAATTGTGATTTTAACATAACACGTACCAAAATGTGACAAACAATTTGATGATTCATGATTGAGGAGGCAGTTTACTTACTACATTTAGATATGAGAGTTTTGGTTATAGCGTGTGCAGTGGAAtcacattatttttcatttaatacaacATTAGCTCAGCTTGAAAAATAATAGCAAACCACATAGAAGGAATAAGGtatcaaaaaaagaagaaataaaatatCATCATGCTTGTTATTTGATTTTAGTTATGCAGACCAGCATCTTGattttcataaaaatatatataggcaGAAACCAATTAAAATTTACAAATAACTAAAGtttcattcttaaaaataaatcgACCAGAAATCCTTCTAAAACAGCAGTTAATGAAGTAAAACAAgtataaaaagattaaataaaatccaaaaaaGCAGATTTTCCATAAACATCGACTGCAAAAaagcaatataaaaatattataggaattaaaATCAATTTTCCAATGACAAGACACACATAGGATTGAACACCGACTGAATATCCATACAGTAGCATGTTAAAAAAGTAACAATCAAAATTAAATCCACAAAACGTCATGTATTCTTTAATTTCTTGCTATCTATTTAACTAGAAACCCCTTCGTTCAAGAGTTAAATGTGCAAAAACATGAGTATAAAGTGGGTGCAAggatttattgtttatatattgaaGTTGGCTCTCGCCGGATCCTGTTTTGACTGGCATCACGACTTCTAATTATAACAAACAGATTATTTTATAAACCGAGGACATCAGGAAGTCTTGTTTCCAAAGCAATGATCCAACAATGTTTAACCTTAAAGAAGCGTACTGCACCTAGacggcaaaaaataaaatgaaagaaaaacaaacagcagAAATGTTAAAACCTCGACCTGAGATAAAAGAGGAGCCGCGAGGACAAAAAGTCAAAACAGTTGTTGGAGACTTTGATATGGGATCTGTTGTTTGTGTAACCTCGTCTGATTCATTGTTTTTGGGACGACTTAACAAAAATGTAGCGACTAATAAGAGAGTATTAATTTCAAAACATCAGATTTAGGACACTTTAAGATTGATTTATAGCAAAACGGAGGTGTTTCAGGGAGACAAAGTTACAGAAAAggctaaataaaaacatttagtttaaCAGAAAACGTAAACTGATTGTAAATGTCTTCACATTTCAACATCTTCCCACCATAAGGCACcccaaatataaacaaacacactctcGGAAAATGTTTTTAGGGTAAAATGAcgagaatatttaaaaatctagTCTGTAAATAATGATGAGGAGGAAGAAATGACCCTACTAGCCACGGCTGACCATCATATACACATTTGTGTGAAttaaatacatgcaaaaatgtacatacaaatatacaaacactATAGATCCTTCCTACAGCTGTATGATTCAagcttaaaggggcagttcacacaaaaatgaaaaagagCAGTTTTATTTCAGACGATCCAAGATGTAAGTGATGTTTTATTCTTTAGAAGGGCTTTATTGAAGGTTTTAGCTCATAAAATGGAAGTCCAGGTACTTTAAGAGTCATAAAAAAGACACATACAGGCAACACAAAATTAATCCTTATGATACAATAAGATCAGAAGTTAAACGATCTGTCTGCGCTATAAACTGATCACAATTCACAACATGAGTCATTATGTCATTCTGAGTCAAAGGCactcattttgttttgcctgttttgtttgactctcaaagttgtttgtttttctgctttTCAATAATATTTAGCTCCACCAAAGACCAGTTTAAGAAAAacttaaatttctgtcattatttactcttccTTTACTCGTTGAAAACCTGTACCTTCCATatacttgtttttcctactatagaagtcaaaaGTCACAGGTTTCCGcctttcttcgaaatatcttctcaaagaaactcaaataggtttcaaacaagtcaaGAAAGAGATTACAGATTACAGAACCTTCAGTTTTGGACAAACTAACCCCTTTacttctcttgttttttttttttgttgtttttattttactgtcaaAGTTGTTTGTTTTTCTGACTTTCAGGAATATTTGACTCACCAAAGACCACAGTTTCAGCAAATGTTTACAagtttctagctttcttcaaaatatcttctcaaaGAAAATtgtGAATATTTGACTCACCaaagaccacagtttcagctaaaaaggcttagttcatccaaaactgaaagttctgtcataGTTTACTCTTCCTTCACTTATTCAAAACCCATTTTAGTTTCTTtgagaagatgttttgaagagaGCTAGAAgtctgtagccattgacttccatatactTGATTTTCctatacaatagaagtcaatggttacaggtttataggtttctttaaaatatattctcaGAGTCACTCaagtaggtttcaaacaagtgaagaaagagtaaatgatgacagaactttcagttgtggatgaactaacccttttacCTTTTGCATTTCAAGAAAATTATCCAAAGACGACAGACCAAAAAGGGGTTAGTACATCCAAAACTAGAAAATTCGGTCAACATTTACTCTcattcacttgtttaaaacctatttgagATTCTTTGAGAAGATATTTTAGctacaaacctgtaaccattgacttccaaatacttgtttttcctactaaagaaatcaacggttacaggttttcacctttcttcaaaatatgttctttttgtgttcaacagaagaaagaaactcataaatgtttggaaccacttgagggagagttaATAGGGAGTAACTCTTCATTTTTTGTCAAACTACCCCTTTATTGTTCtagttaagaagaaaaaaatgtgcattttgaaAGGTCCGAGGGTGAGAAAATAAACAGCACATTTTCAATTagtgggtgaactgaccctttaaactGGCCCTGCTGTAAAATCAAGTTGACGTCCAGATTTGAGCAATACAGAATGCTAGTTTGGAGTAAATCTTTAACAATCTTTACCTTGTTTACTTTGGAGTAATCCATGGCTGTGTCAAGCTACCATCATTAGCATTTTCTCCTCATACCGTACATCTTCCAAAAACTAGATTGGTCTCATAATTGTACAAAATTACCTTCATTTTTACACAAGCACTTCAGCATTTCAGCACCAACCTTCCTCTTTCTCCTCTAGACGGCTCCGATCATTGGGTTTTTCCGCCGAGGGTCTTGATATTGTTCATCTGTGTATGGGCTGTAGCGGTCAGGACTGGCCGTTCGGTAGTTGCCCTGGTTTAGCGCCTCATATCGCGGTGGCTCTCTGGCTCCTGGATTGGATGACGGAGGGACGTCCTGCCTCATCATCTGTTTTGCTGGGGATGAAGGGTAATGAGCGCCTGGGGTCTCTGTGGGTTTGGGTACAGGCAGACGAGGCGAGCGTGGAGGATTGTCGTAAATGGGGTTCGGGTAAAGGACAGGGTCTCTCTGATTAGACCAGTTCTGGTTTGGATATTCGTCAACAGGCTTCTTCCTGGAGA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003020 False 3334 lncRNA 0.35 2 5795013 5799092
TCONS_00003021 True 3561 lncRNA 0.35 2 5795035 5799092

Neighbor

gene id symbol gene type direction distance location
XLOC_000064 NA coding upstream 66329 5706970 ~ 5728684 (+)
XLOC_000063 cpo coding upstream 207438 5576151 ~ 5587575 (+)
XLOC_000062 atic coding upstream 290883 5437390 ~ 5504130 (+)
XLOC_000061 stk16 coding upstream 360752 5422439 ~ 5434261 (+)
XLOC_000060 tuba8l2 coding upstream 375897 5402476 ~ 5419116 (+)
XLOC_000066 abcb6a coding downstream 336084 6135176 ~ 6158609 (+)
XLOC_000067 cnppd1 coding downstream 362838 6161930 ~ 6185532 (+)
XLOC_000068 retreg2 coding downstream 390857 6189949 ~ 6210718 (+)
XLOC_000069 fastkd2 coding downstream 426401 6225493 ~ 6272146 (+)
XLOC_000070 LO018629.1 coding downstream 508213 6307305 ~ 6329292 (+)
XLOC_000059 NA non-coding upstream 481418 5311479 ~ 5313595 (+)
XLOC_000057 NA non-coding upstream 764858 4901460 ~ 5030155 (+)
XLOC_000056 FO744838.1 non-coding upstream 1114536 4598060 ~ 4680477 (+)
XLOC_000054 CABZ01063288.1 non-coding upstream 2034979 3759924 ~ 3760034 (+)
XLOC_000072 NA non-coding downstream 580786 6379878 ~ 6554470 (+)
XLOC_000073 NA non-coding downstream 599118 6398210 ~ 6403223 (+)
XLOC_000076 NA non-coding downstream 865941 6665033 ~ 6668339 (+)
XLOC_000077 NA non-coding downstream 960091 6759183 ~ 6760930 (+)
XLOC_000078 CU302223.1 non-coding downstream 988598 6787690 ~ 6787804 (+)

Expression


Co-expression Network