XLOC_006512 (pimr47)


Basic Information

Item Value
gene id XLOC_006512
gene name pimr47
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 13660564 ~ 13662624 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012617
ATTTATAAACGATCGACCCTTTCGTAATCTGTTGGTTGAGACGAGGCGACTTTTGCAGAGCATTACTGTGTGGATCCTGAGATTTCTGAGAAAAGACTTTCATTTTAAAGAGCACATTTTActtcattagttttattttcttGCAAGAGATCGGattatttctttaaacatttattttgacatttttcaaTTCCACTTCGTTTTGTTcttaattttttgtttctttttctttttacttttagtttttaactttttattttcatactcttgttttctgtattttcttgTCTCATTACAGGTTGAAGAAGGATGTCAAAGGCCCACATGGGTGAAAGAcgagGCCGCTCCAGATCCAGGAGTGTTGCTTTCACCCAGACATCAGCTCTGGACGCAGACACACGTGATGGCACCACTGAGCTTCCTGGTTATTTGGCTCCTCTGTCTTCCGAGTTGGCGGATTCTGTGTCCACTGAccagaggaagaggaagaggaggagcagcAGCCAGCAAACGGCGTCCACCTCGTCCAGAAGACCACcagccaaacgctctcgcagagACATGTATGCgaagggcccgttgctgggacgaggtggattcggctctgtgtttgctgggatccgcaggtctgatggactgccagtggccatcaagtaCGTGTCTAAGGACCGGACGCACACCAGACTGAAAGTTGACGGTCAGGGTCGtctgccgctggaggtggcattgaTGACCCGCGTCACttcagctcctgcctgccccagtgtcctgcagctgctggactggtttgaccgtcccagacgcTACGTCCTGATCCTGGAGCGTCCGGCTCCTTGCCAAGATCTgcagagcttctgtgaggagaacggctgtctggacgagcgtctggccaagaaagtgctggtgcagctgatcgcggcgctgaaacactgcgagagcagcggcgtcctgcaccgggacgtcaagccagagaacctgctgatctccaaagagtcccaggacatcaagctgctggactttggctgtggagatctgctgaagcgcTCAGCCTACAAATACTTTGCTGgcactcctgcatacGCTCCTCCAGAGTGGTTCCGCAGACATCGCTATAATGCGACGCCAGctacagtctggtcagtaggagtgaccctttacaacatcctgtgtgaccGTTTCCCCTTCAGAGGCGCACAGAAGGTCACGTCCAAAAGCAGACTGATCTTCCCTAGAAAgctgtcaacagagtgccgtcacctgattcgctggtgtctcagtgcagcaccAGCAGATCGACCCAGTTTAGATGATATTGAGCgccatccctggtt
>TCONS_00012618
caagtaCGTGTCTAAGGACCGGACGCACACCAGACTGAAAGTTGTAAGTTCCAGagtgaatctgttgtgtttgaCGTCTTTCATTCAGTCCTGCATATAATGAAGTGTTTGTCCTTCAGGACGGTCAGGGTCGtctgccgctggaggtggcattgaTGACCCGCGTCACttcagctcctgcctgccccagtgtcctgcagctgctggactggtttgaccgtcccagacgcTACGTCCTGATCCTGGAGCGTCCGGCTCCTTGCCAAGATCTgcagagcttctgtgaggagaacggctgtctggacgagcgtctggccaagaaagtgctggtgcagctgatcgcggcgctgaaacactgcgagagcagcggcgtcctgcaccgggacgtcaagccagagaacctgctgatctccaaagagtcccaggacatcaagctgctggactttggctgtggagatctgctgaagcgcTCAGCCTACAAATACTTTGCTGgcactcctgcatacGCTCCTCCAGAGTGGTTCCGCAGACATCGCTATAATGCGACGCCAGctacagtctggtcagtaggagtgaccctttacaacatcctgtgtgaccGTTTCCCCTTCAGAGGCGCACAGAAGGTCACGTCCAAAAGCAGACTGATCTTCCCTAGAAAgctgtcaacaggtaagagattcaga

Function

symbol description
pimr47 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-19 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000056598

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012617 False 1331 mRNA 0.51 7 13660564 13662624
TCONS_00012618 True 686 lncRNA 0.55 2 13660732 13661533

Neighbor

gene id symbol gene type direction distance location
XLOC_006511 CR788322.1 coding downstream 16002 13644445 ~ 13644562 (-)
XLOC_006510 NA coding downstream 69994 13587296 ~ 13590570 (-)
XLOC_006509 fgfr3 coding downstream 365692 13213567 ~ 13294872 (-)
XLOC_006508 nsd2 coding downstream 629713 12993851 ~ 13030851 (-)
XLOC_006507 NA coding downstream 903903 12748652 ~ 12756661 (-)
XLOC_006513 CR788322.4 coding upstream 7816 13670440 ~ 13670537 (-)
XLOC_006514 NA coding upstream 74918 13737542 ~ 13740560 (-)
XLOC_006515 ky coding upstream 80578 13743202 ~ 13754091 (-)
XLOC_006516 NA coding upstream 350561 14013185 ~ 14015180 (-)
XLOC_006517 gfra4a coding upstream 528669 14191293 ~ 14487524 (-)
XLOC_006471 BX537274.2 misc downstream 3395659 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 12834339 825904 ~ 826225 (-)
XLOC_006502 NA non-coding downstream 1073152 12586997 ~ 12587412 (-)
XLOC_006497 NA non-coding downstream 1542314 12117113 ~ 12118250 (-)
XLOC_006518 AL928929.1 non-coding upstream 721797 14384421 ~ 14384538 (-)
XLOC_006519 NA non-coding upstream 870096 14532720 ~ 14533254 (-)

Expression


Co-expression Network