XLOC_006524 (rab11fip5a)


Basic Information

Item Value
gene id XLOC_006524
gene name rab11fip5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 15091264 ~ 15142280 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012631
CATCACCGCGGGCGGCTCGACGACCCACGCGCGCTGCATCTTAAAAATGTGTCGCTGTGGAGCACAAAAACGATAGGCTGGCACGGATACTGTGCGAGTTCAGCCGCACCACTGTCTTATGTGCCCGTGCGCGGTGCACCGGTGACCATGTCCTTGGCGAAGAGCGACGAGGACCAGCGATGGGTGCCAACGCACGTGCAGGTAACGGTGCTGCGGGCCCGAGGGTTGCGCGCGAAGGGCAAACACGGCACCAGCGACGTGTACACCATCATCCAGCTGGGCAAGGAGAAATACTCCACGTGCGTGATGGAGAAGACTACCGATCCGGAATGGGGCGAGGAATGCTCGTTTGAGCTGCAGCCAGGGATACTGGAGGAGGAAGGGCGAGACGCGTACCCACCCGGTAGTGGCGACCTGACCCTCACCGTTATGCACCGAGCTCTGATAGGGCTGGATGTGTTCCTGGGCCAAGCTGTTTTACCGCTGCATAAAGCCTTTCAGGATCGGAAGAGCAAGAAGAATGAGTGGCACAGGCTCCATTCAAAAACGGGCAAAAAGGAAAAAGAGCGTGGGGAGCTTCAGTTGTCTGTCCAGTTTACGCGACACAACCTGACGGCCAGCATGTATGACCTCTCCATGAAAGACAAGCCTCGCTCTGCTTTCGACAAGCTCCGAGAACGTATGCGAGCTAAGAAGCGACCCGCTGAAGAAGACTCCTCTTCAGCTATTGTTCCTGGAGGATACGGAGCACTGGCGCGCATGCGGGGGCGACTGCCGAGCGATGGGGGCGGCGAGGAAGACTACGAGGACGATGAAGGAGGGGAGGCCCGCAGGAGTAAGATGAGAAGTTTTTTCCTGCGTGGGAGATTGAGAAAGTCTTCAGATACGCGCTCCAGCACGTCACTGGGCTCCGAAAGCAGCGAGTCTTCATCGCGTGGCGGCAGCCTGAGCCCTACAGCGGGCATAAGTGTGGTGGTCTCTGATCTTTCCAACTCGCCCAGTAACAGCAGCAATCTGACTGCAGACAACAGTCCAGAACACACAGTCGCTCCTTCGCCACAGGTTTCTCCCGTCAGACATGTGATGTATGACATCAGCTTACCAGTGCCTCATTCTATGATGTCAGACAACGACACCCCTATCCTGCTTCCTTCAGTGTGTGTGAACGGGAACCCTGTGGAAACGTCTCCACTCACTCACCACCCACCGACACTTGTACTACAGCATCCTCAACAAGAGTCAACCAAACCAATAACTCAGTCAGGTCAACCCCAGGCAACCAAGCTGCCAGCAAAGCCAGAGAAATCCCAAGAGTCAAAGCCAAGGCCCGAACCCCGGCTCCCAGCCCTCGGGGTGCTTCAAAAAGGCTCCCTTTCACTCTCCCTGCAAAACCTCTCTCGCCAAGGGAAAGAAAAGCAGAATGGTGGCCCCGTGGATGGACGACGCTGGTCCTTCGATAAACCTGGCGAGGAAGAAAAAGCCGCCATTGTTGCAGCACTAGAGCATGCTGGGAGAGTTACAGATGAGCCTGTGAATGAAACCGTGATACGTGCTGGAGAGACAGAGACTCAGGGCAAGAAAAGGAGGGGCCTGTTTTCACATGGGAAAGGTGATTCAGCTGGTAAAGGACCAATCACGAGTAAAGAGGAAACAGAACATGCTCAACCACTTGTGGAAGTCAAACACAAAGGATGGTTCAGCTCCAAGGACTCGCACAGTAAACCCAGTCCACACCCAGTGAAGCCATTGACGCCCCCTGATGAGAAGAGGTCAGAGGGTCGATCTGTACTAGAGAAGCTTAAATCCACCATACACTCAGGACGAAGTGATGCAGACAAGAAGCCACTAGTGGAAGGAGGAGGCTCCTACTATCACCTTAACCACAGCGAGCTGGTTAATCTGCTGATCCAGCGGGACATGGAGCTCAGGCAGGAGCGCGAGGAGTACGAAAAGCGAGGGATGTTGTTGGAGAAGCGCGAGACTGACTTAAAGAAGATGAAGCTTCTGATTAAAGATCTGGAAGATTACATTGACACACTGCTCGTACGAATCATGGAACAGACCCCCACTCTGCTTCAGGTTCGCCCCAAAATGAAATGA

Function

symbol description
rab11fip5a Predicted to be involved in regulated exocytosis. Predicted to act upstream of or within protein transport. Predicted to be located in endosome and membrane. Predicted to be active in cytoplasmic vesicle and mitochondrion. Orthologous to human RAB11FIP5 (RAB11 family interacting protein 5).

GO:

id name namespace
GO:0045055 regulated exocytosis biological_process
GO:0005769 early endosome cellular_component
GO:0030141 secretory granule cellular_component
GO:0055037 recycling endosome cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0045335 phagocytic vesicle cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-206 Predicted to be involved in regulated exocytosis. Predicted to act upstream of or within protein transport. Predicted to be located in endosome and membrane. Predicted to be active in cytoplasmic vesicle and mitochondrion. Orthologous to human RAB11FIP5 (RAB11 family interacting protein 5).

Ensembl:

ensembl_id ENSDARG00000104179

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012631 True 2100 mRNA 0.55 5 15091264 15142280

Neighbor

gene id symbol gene type direction distance location
XLOC_006523 sfxn5a coding downstream 9240 15020822 ~ 15082024 (-)
XLOC_006522 NA coding downstream 109684 14950795 ~ 14981580 (-)
XLOC_006521 cdc25b coding downstream 162028 14915344 ~ 14929236 (-)
XLOC_006520 ap5s1 coding downstream 182265 14902318 ~ 14908999 (-)
XLOC_006519 NA coding downstream 558010 14532720 ~ 14533254 (-)
XLOC_006525 NA coding upstream 314396 15456676 ~ 15457624 (-)
XLOC_006526 BX511166.1 coding upstream 432857 15575137 ~ 15580152 (-)
XLOC_006527 ckba coding upstream 539795 15682075 ~ 15702736 (-)
XLOC_006528 bag5 coding upstream 619998 15762278 ~ 15799391 (-)
XLOC_006529 si:ch211-57f7.7 coding upstream 711397 15853677 ~ 15865335 (-)
XLOC_006471 BX537274.2 misc downstream 4826359 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 14265039 825904 ~ 826225 (-)
XLOC_006518 AL928929.1 non-coding downstream 706726 14384421 ~ 14384538 (-)
XLOC_006516 NA non-coding downstream 1076084 14013185 ~ 14015180 (-)
XLOC_006514 NA non-coding downstream 1350704 13737542 ~ 13740560 (-)
XLOC_006536 NA non-coding upstream 1118371 16260651 ~ 16261573 (-)
XLOC_006537 BX323467.1 non-coding upstream 1165487 16307767 ~ 16307883 (-)
XLOC_006538 NA non-coding upstream 1726100 16868380 ~ 16879070 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_04885766_04904637 RAB11FIP5A, RAB11FIP5 coding CI01180000 null 4884939 ~ 4905382 (-)
bowfin (Amia calva) AMCG00015768 LOC106565696 coding CM030132.1 CM030132.1 20555875 ~ 20556255 (+)