XLOC_006529 (si:ch211-57f7.7)


Basic Information

Item Value
gene id XLOC_006529
gene name si:ch211-57f7.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 15853677 ~ 15865335 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012642
GTGAAATCTATCCTATCGTTAAgcttatgaaatataaataatgtgattaattgAGGTATTAAGTTTTTTGATTATTGAAAACATGACATGACTGCTCCagcaaaatgtttattaaaaatcctAAAATAAGTGAAAGCAGTAGGTTTAATTAATACAAAGTCACATATGAAGTATATCattttagttattattagaaTACATTTAGTCTAATAAGGTTTTCTTTATGGTGTCGCTATCCTTAATGGGTTATTTTGGTTATATTATGCGCTCCACACTTCAGTCCAGAAGGTGGCAGGAATGCACCTTGTTTGTTTGCCAGCTGCCATTAATCAAAAAATAAGACGAAGTAAGCTTGATTTTACCACGTTTCTGCATTTGACCACGATGAACAGTGATAGCGCCAACCTTACAGATGCGATTAACATTTTGCGAAATGTTCTTGCTTCGCCGACTATAATTAGATCCATATCTAATTCAGTGGATTCAAATGCGTCCCCTTCAGCTGAACTTCAAACAGAAACAGAATCTGAATTGCGCAATTTGTTTCGGCCATCTCGCGCTCAAAGCATCAGGCAATCAATGTCCGCCGGTGAAGGACCACGATACCATACTCGCCAGCAGTATGGCAATTGGCAGTCTCGGTCCAGAAAAAGGCCCAGAGGACAATACCATCAAACTTTCAACAAAGACGTAATCTTGTTGACCTCTCCTAATGATAAAAATGTTGTTAAACAAAGGAAAAAACAGCGCTTGCATGAGATTGGACACATATTAAATGCTTTCGAATTTGAAAAAGCATGGGACAGTACTATGGTTTTAAGAAGAATTAAAGAAGGCTTCAAAGAGAAAGTGCCATTCGATGTAagTTTGGAAATACTTATGGGATGTGGCAACAAGCTGATTAAACCACAGTTAACTGAAGGTCAAGAACTAGATGGCCGAATTATTTTAAAGGTCTTCAGGTTGAAGGCCTTGTATGTTAGACCCTCAAGACCACTACTCTTGACTGAAACAGACTGCTCTGATGACAGCTGCTTTGAGGTTGACATGCCAGGTGAAAGTATCCACCAATCACCAGGAACTGCTTCTGATGAGAATATGAACACTGACTTCAATGACCAATCTTCCACACAAAACTCTTCCTCCACCAGAGTTCAGTCATCCACAAGAACTCAATTCTCCACCAGTTTCAGCAGTGCACAGCCCTCCACAAGTTCCAGCGACACACAGCCTTTCACTAGTTTTAGTGGTGTACAACCCTTCACCAGTTCCAGCAGTGTGCTGCCCTCCACAAGTTCCAGTGGTACACAGGCCTCCACCAGTTCCAGCAGTTTGCCGCCCTCCACCAATTCCCGCGGTTTGCAGCCCTCCACCCTTTCCAGCGGTGCGCAACCCTCCACCAGTGGCCAGCTTTGCACTAGACGTAACGCACCAGCTCAATCCTGGAACACGGACCAGTCCTTTAGATCTGCTTCCTGGGATGGTGATTATGATACCTACATTTCCCTCCTCCGGGGAACGTCTGAAGATGAGGAAGAAGATGAAGATCTTTGCTGCGCTATAATGGCCAGCATTGAGGACCAGATATTTCCCCCAGCAGTTGAAATCCCAATAAAGGAAATACTGGAGGAacttgcatcaaaaataaatgGCAACCAAACCTGCAAGTTTAATATTAATCGTGCATCTGTGTTGGATGGTGCTATACGGGGATTTACGCGAATGTCCTACAGTCCAAATAACAGAATGGTCATTAGGTTCTCCGACGATAAAGGAAAGTTTGAAGAGGCTGTTGACTTGGGCGGCCCTAGACGAGAATTTCTACGACTCCTCCTGGTGGCACTAATGGAGTCATCAATGTTTGATGGAAAAGAGGGCAGTATAAACTTGGCACTTGATTCACAAgCCATGAGGGAGGACAGATATTTCATTGCAGGGAGAGCAGTTGCAGTCAGTCTTGTGCATGGAGGACCTGCACCTGGTTGTTTTTCAAAAACGCTATATGACAGTTTAGTTCAGGGACCAGACATGTGCAGACCTGGCTTGGAGGATGTAGCTGACCCTGAgatttatagtaaaataaaaaagCTTTCTGAAGCCTCAACTGTGGAAGAGCTACGAGAGTCAACTGAGCCCATCATGGACTTCCTAGCCAATGCTGGTTGTCTTAGACCTATAAAGAACATTGATGACAAGGACAGGCTAGTTGAAGATCTGCTTATGTTTCAAGTGGTGAATCGTGTCCGTGGACCATTTGAAAGGTTCAGAGATGGCCTGAAAACACTTGGTGTCCTTGCTAAAGTCCAACAACACCCGGAATCGTTTAGGTCCTTGTTTTGTCACCAGCCAAAGCAGCTGACTGCAGACATGATGGATGACCTGTTTGAAATACAGTGGTCAGAAATTGGGAGCAACAAACGGGCTAATGAGAACAGGGTAATTGCCTTTTGGAGGGACTACCTGCAGGATGTAGaagAGGAAGGAGCACAGAGGCTTGGCGCGATCTTATCCTTTACCACTGGATCAGATCATGTCCCACCAATTGGATTTCATCCCCAGCCTTCCATTGCCTTTCACCATGACTCTGAACTTCTACAAAGATTTCCAATAGCCAATACTTGCATTAACTGCCTTCGCCTGCCTTTATATAGCACCTATGGtgcttttaaaagcaacatgGAATTTGCTATCAACAATACACATGGATTTGGCAAGGAGTAAGAGAGACTTAAATGccaagatgttaatattaagcCAGGGTTCTTATTGAAGCAATAGATTGCaagagatggttcacccaaaaatgtaaatctactcactatttattcaccaCCAAGTGGTTCCAACCGTGTTTGACTTACTTTCCtttgttaaacattaaataaactaatttgaaGAACTAGACTTGTAACTATTAACTTCAAAAGTAGTTTTTAAGTGGTTTCAGgttttcagtattttttaaaatataactttgtttggcaaaacaaattaagtaaacatTTTGAATAAGTGAAGGATAATTAAATAatggcagttttcatttttgagtgtactgtccctttaataatttTCAGCAATGTTACAATTAATCTTAGCAGTTCATGTTTCAACATTAAAGGGCTAGTTTATATACAAATAATTGTCATTTACTCTTTACTCTTCACTTTTCAAACCCGTTTGAGTTTCTTTGGTTAAAGGGTTTAGctttattcaaaatgttttttgttcaatagaaaaaaaaaatctcaaaggtATAGAGCCAATTGAGGGTGTGTAAAAAGtgataaactatccctttaactaggAATTAACATTTTCAACCTTTATGCTAACATGTTAATGTGCCAGTGTTCTTGAGGCATTTGTTTAACTCATTGTTAGGAAGTTTTCATCATTTTTGATCAATCCtaacattactttttttaactGATGTTTTCCATGTTTTTACAAGCATTTgtgtaatacatttgtaaatgcaTGTTTATGGATTAATTACATAACATTTGCTGTGTAGTAAATAAAGCATTTgcaggaataaattgcaataaacACTTGCATTACAAACA

Function

symbol description
si:ch211-57f7.7 Predicted to enable ubiquitin-protein transferase activity. Predicted to be active in nucleus.

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-119 Predicted to enable ubiquitin-protein transferase activity. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000093131

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012642 True 3569 mRNA 0.40 10 15853677 15865335

Neighbor

gene id symbol gene type direction distance location
XLOC_006528 bag5 coding downstream 54286 15762278 ~ 15799391 (-)
XLOC_006527 ckba coding downstream 150941 15682075 ~ 15702736 (-)
XLOC_006526 BX511166.1 coding downstream 273525 15575137 ~ 15580152 (-)
XLOC_006525 NA coding downstream 396053 15456676 ~ 15457624 (-)
XLOC_006524 rab11fip5a coding downstream 711397 15091264 ~ 15142280 (-)
XLOC_006530 ttl coding upstream 53114 15918449 ~ 15929402 (-)
XLOC_006531 ikzf1 coding upstream 92173 15957508 ~ 15994472 (-)
XLOC_006532 SPATA48 coding upstream 162224 16027559 ~ 16066997 (-)
XLOC_006533 vwc2 coding upstream 285319 16150654 ~ 16191674 (-)
XLOC_006534 zgc:110045 coding upstream 353747 16219082 ~ 16226312 (-)
XLOC_006471 BX537274.2 misc downstream 5588772 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 15027452 825904 ~ 826225 (-)
XLOC_006522 NA non-coding downstream 872097 14950795 ~ 14981580 (-)
XLOC_006519 NA non-coding downstream 1320423 14532720 ~ 14533254 (-)
XLOC_006518 AL928929.1 non-coding downstream 1469139 14384421 ~ 14384538 (-)
XLOC_006536 NA non-coding upstream 395316 16260651 ~ 16261573 (-)
XLOC_006537 BX323467.1 non-coding upstream 442432 16307767 ~ 16307883 (-)
XLOC_006538 NA non-coding upstream 1003045 16868380 ~ 16879070 (-)
XLOC_006540 NA non-coding upstream 1628962 17494297 ~ 17530536 (-)
XLOC_006541 NA non-coding upstream 1821149 17686484 ~ 17693819 (-)

Expression


Co-expression Network