XLOC_006530 (ttl)


Basic Information

Item Value
gene id XLOC_006530
gene name ttl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 15918449 ~ 15929402 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012643
ATACACGTTTGTTTTGAGAGATGACACCAGTACTGTGTATGCTGAGGTCGCCAAGATTCTTACTTCAACTGGAAAATGGAAACGACTCAAGAAAGACAACCCTCGCTTTAATTTAATGCTGGGAGAGAGAAATCGGCTGCCTTTTGGACGGCTGGGTCATGAACCAGGACTCATGCAGCTGGTGAATTATTATAGAGGAGCCGATAAACTGTGTCGCAAAGCATCACTGGTCAAGATTATCAAGACCAGTCCAGAGTTGAAGGACTCCTGTAACTGGTTTCCTGAGTCCTACATCATATACCCAACCAACCTCAACACCCCGGTGGCCCCGGCCACCAACGGCATCAGCCACATGAAGAGCAACCCAAAGACAGATGAGCGAGAAGTCTTCTTAGCATCTTATAACTCCAGAAAGGAAAGTGGAGATGGGACAGTGTGGATAGCCAAATCATCAGCAGGCGCAAAAGGTGCTGGCATTTTGATTTCTCATGACGCAAACCAGTTGCTGGAGTTCATTGATAATCAAGGCCAAGTGCATGTCATTCAGAAGTATCTGGAGAAACCTCTGCTGCTTGAGCCAGGTCATCGCAAATTCGATATAAGAAGTTGGGTGCTTGTGGACCATCAGTACAACATCTACCTGTACCGTGAGGGTGTGCTGAGGACATCGTCTGAGCCCTACAACAGCTCAGATCTCCAGAATATGACCAGTCATCTGACAAACCACTGTATTCAGAAAGAGCATTCGCAGAACTATGGCCGATATGAGGAGGGCAATGAAATGTTTTTTGATGAGTTTAAACAGTACCTGCTGAACACACACAATCTGGCTATGGAGACCTCTATTTTACCTCAGATCAAGCATATAATCAGgaGCTGTCTTGCATGCATCGAACCAGCCATCAGCACAAAGCACCTCTCCTACCAGAGCTTCCAGCTCTTTGGCTTTGACTTTATGCTGGACGAAAGCTTTAAAGTCTGGCTGATTGAGATCAATGGGGCACCTGCCTGTGCACAgaAATTGTACCCTGAGCTCTGTCAAGGGATCGTGGATGTGGCCATCTCCACAGTCTTCTCTCTGAGTGCGGATGCTCTCTCATCTTCACCTCCATTCTCCACCTCTCCATCTTTGTCCTCCAACTCCTGCTCCTCACCCAAGATCAGAGCACCCCATCACTTCGGCCCATTCAGCAAACTATAAATGACTTGCAAAATACTGCCATTATCATGCAAACCCCACTGTCCCACTTAAAACAACATCAGCCAGTCTAAAATTTTAAGGGGCTTGGGGTTGAACATGC
>TCONS_00012644
GATGTCCTGTCTGGACGAACGCACAAGAGGCTAGGGTTAAACTATATAGTTATATAGTCAACCACTATTCTTACGCTCTGCACAGAGCTGGCTTGTTCCCGGACTGTGTTTTATAACATCTGCAGTTCAGAGATATTCACTAGCGGAGAGAACGCTAGCGTAGACTGTTAGCCGCGAGAATTTACTAGACAAAATCCTTCAAGAGTCACACCCTAAATTTCAGTTTCCTCGCATCGGCCACGCGATCGACTGCGGGTTCAGATGGTCCACCCTGTCTGGACGACAGTCGTACTATGTACATACTGTACTTGTTAGAGCAATACAACTAAGAAGCGTCAGGGGAATCATGTATGTCCACTTTCAGTCTACTTTGTTGGGAGACAGATAACGTTAGTCTGCTAGCTGTGTGTGTTCTTCATCATTACGCTGCGCTCTTGTCTGAAGACTGGGAATCATGAATTCACCAATATACACGTTTGTTTTGAGAGATGACACCAGTACTGTGTATGCTGAGGTCGCCAAGATTCTTACTTCAACTGGAAAATGGAAACGACTCAAGAAAGACAACCCTCGCTTTAATTTAATGCTGGGAGAGAGAAATCGGCTGCCTTTTGGACGGCTGGGTCATGAACCAGGACTCATGCAGCTGGTGAATTATTATAGAGGAGCCGATAAACTGTGTCGCAAAGCATCACTGGTCAAGATTATCAAGACCAGTCCAGAGTTGAAGGACTCCTGTAACTGGTTTCCTGAGTCCTACATCATATACCCAACCAACCTCAACACCCCGGTGGCCCCGGCCACCAACGGCATCAGCCACATGAAGAGCAACCCAAAGACAGATGAGCGAGAAGTCTTCTTAGCATCTTATAACTCCAGAAAGGAAAGTGGAGATGGGACAGTGTGGATAGCCAAATCATCAGCAGGCGCAAAAGGTGCTGGCATTTTGATTTCTCATGACGCAAACCAGTTGCTGGAGTTCATTGATAATCAAGGCCAAGTGCATGTCATTCAGAAGTATCTGGAGAAACCTCTGCTGCTTGAGCCAGGTCATCGCAAATTCGATATAAGAAGTTGGGTGCTTGTGGACCATCAGTACAACATCTACCTGTACCGTGAGGGTGTGCTGAGGACATCGTCTGAGCCCTACAACAGCTCAGATCTCCAGAATATGACCAGTCATCTGACAAACCACTGTATTCAGAAAGAGCATTCGCAGAACTATGGCCGATATGAGGAGGGCAATGAAATGTTTTTTGATGAGTTTAAACAGTACCTGCTGAACACACACAATCTGGCTATGGAGACCTCTATTTTACCTCAGATCAAGCATATAATCAGgtgctcatttacaaaaaaaagtttattttcgcCATGAAAAAAGATGGAATTTCATGTTTTTGTGCCTATGAATGGGTTACATTAAAGGTGCACTaagcaatattaaaaaaa

Function

symbol description
ttl Predicted to enable ATP binding activity and ligase activity. Predicted to act upstream of or within cellular protein modification process. Orthologous to human TTL (tubulin tyrosine ligase).

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005575 cellular_component cellular_component
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-060929-608 Predicted to enable ATP binding activity and ligase activity. Predicted to act upstream of or within cellular protein modification process. Orthologous to human TTL (tubulin tyrosine ligase).

Ensembl:

ensembl_id ENSDARG00000062418

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012643 False 1301 mRNA 0.47 7 15918449 15928934
TCONS_00012644 True 1452 mRNA 0.44 5 15924376 15929402

Neighbor

gene id symbol gene type direction distance location
XLOC_006529 si:ch211-57f7.7 coding downstream 53114 15853677 ~ 15865335 (-)
XLOC_006528 bag5 coding downstream 119058 15762278 ~ 15799391 (-)
XLOC_006527 ckba coding downstream 215713 15682075 ~ 15702736 (-)
XLOC_006526 BX511166.1 coding downstream 338297 15575137 ~ 15580152 (-)
XLOC_006525 NA coding downstream 460825 15456676 ~ 15457624 (-)
XLOC_006531 ikzf1 coding upstream 28106 15957508 ~ 15994472 (-)
XLOC_006532 SPATA48 coding upstream 98157 16027559 ~ 16066997 (-)
XLOC_006533 vwc2 coding upstream 221252 16150654 ~ 16191674 (-)
XLOC_006534 zgc:110045 coding upstream 289680 16219082 ~ 16226312 (-)
XLOC_006535 zgc:110045 coding upstream 301154 16230556 ~ 16257848 (-)
XLOC_006471 BX537274.2 misc downstream 5653544 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 15092224 825904 ~ 826225 (-)
XLOC_006522 NA non-coding downstream 936869 14950795 ~ 14981580 (-)
XLOC_006519 NA non-coding downstream 1385195 14532720 ~ 14533254 (-)
XLOC_006518 AL928929.1 non-coding downstream 1533911 14384421 ~ 14384538 (-)
XLOC_006536 NA non-coding upstream 331249 16260651 ~ 16261573 (-)
XLOC_006537 BX323467.1 non-coding upstream 378365 16307767 ~ 16307883 (-)
XLOC_006538 NA non-coding upstream 938978 16868380 ~ 16879070 (-)
XLOC_006540 NA non-coding upstream 1564895 17494297 ~ 17530536 (-)
XLOC_006541 NA non-coding upstream 1757082 17686484 ~ 17693819 (-)

Expression


Co-expression Network