XLOC_006532 (SPATA48)


Basic Information

Item Value
gene id XLOC_006532
gene name SPATA48
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 16027559 ~ 16066997 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012653
GCTGATGATTACACCTGTGGCTGCCATCTGCATAAAACCACATACCCAGCCACGTCTACAAGAGAGATGGGgtatttatgaaaatatattcTATTCATTTCTTAATTGTTTGCTTTTATGAATCATTAATGGGCGAGAAAGGAGAAACTTATCGTGTAAGACTTCTCAAGGCTCCTTGTGGGAATTCAAAAGAAGTGAGCAGGTGGCTGTGCAGACGCATGAATCTGCCCTGTGAGAAAGGTCCAGAGGGAAGGTATGACTTTGAAAGCATGGCGGAGACAGACAGACGTGCATTCTCCAAATTCAATCCTGCAGCCAAGCAACCAGCTGAAAATGCGGCTCTGGCCCCTCTGCGTGATGGTGTGTCTCTAATAGATCATTGCTCTGGTCAACTGAGTACAGGGGCACAGGTGCATCTGGAGGTAACCAGCAGAACTCCATTCGTCAATAGGGTTTATCCTACGTCTGATCTGTGGGTTCCGGCAGGTGCACGAGACAGGCCTCAAACTCCACCAACCCGACCTTCAGCTTTGATATATGACAATTCTGAACACAAGAGGTGGAACTCGAGGATGAGACCAGAGGCAGCACTGAAAGCAAAACTTGAAGGTTGGACAAATGCACAGAGCATTAAACAACCCTCTCAGGACAGCCATGAAATAAATGCGGATCCGGATCCATCTGTTCTTTTTGATAGCAAAGCAACAGCAGCTCAACAATATATCTACACTTCTGCAACCCAAAGAGGTTATGAGGATGTGGCCTGGGACTCGAAGTTGCCTCCTCGTCACGAACCACCCATATCTTCTCTGGAAAAAATGGCTGACCCTGTGAGCCAGTGCTTTGTGCTAAAGCGATACCATAGTAGACCTGAGCTTTGGCAGGCCATTGGATCCCATTGGAGCAAACACCAGTTACGTGGCACATTTAACCCAAAGAAACCCATTAGCTTCACCAGTTCATGCCCAAAATCAGGCCATATTCCTTTATACTGCGGTACAGTGGGCTCTGAGAACATGGACAATGTGAACATCCCAGAAGAAGACTTCACCCCTCTGACAGTTTTGAGGAGCAAAGTACCTCCTCATACCCTTACCAGCTATCGAACTACTATTCCTGGTTACACTGGAAAAGCCCGGTTTGATAGAGCACAGACTTCAGAGGCCAGTCTGCCTTCTTTGCTTTGTACTCCACAAACAGCAGGGAGCCTTCCTGGCACATGGAACTCCTCATTCTATGGACGCAAAGCTCCACTATCAAGTATGATCACTACTGTCCCTCCAGGAAACCCTTACCTTCATTCCAAAGCCCCGGTACTTTCCATGAAATAACTAAGAGGAAGAGTGTTCttttacaaagaaaaataaatgatgaagAAATATGGGAAATGAGAGTCTTCCTTTTTATAAAATCCAATCTGTGTTTGTGAATAGATCTATAATGATGCTATGTCAATGACTGATTCTCTAAGCTCTGAGTAATGATGAGCATAATTTCCCTTGATTTAGATGAGTGCTTCTGTAAATGTGGAGGTTGTGCCATTGTCTTAatcttcgtgtgtgtgtgtgcgtgtgcgtgtgtgggtTTACATATTTGACTATATGTGTGTCCATGCGGATAAATGAGTGAATCATTTTCTCACAGATCCTCTTTTGCAAGCGTTTATTGCTTTGGCACATCCAAAAAGCACTTGCAAACTGATTGCAAAAAGAGATATTTTGTGGTTATGTAGCAATGGCATTGCAAATAAAACTTTGTTCGTTATGatcttaaaagaaaacaaaagacatGCATTTCTGAAATGTTCTAGTTTTGCAGCCCAAGAACTGCGGTTTGGAGAATAAATGAAAGAGCACCAATGAAGCTTCACCTGCTTACAGGAAATAGGTTTCCTGTTTCCCCCTTTGTCAACTCTACGCTTCTGTGTCAAAAACAGTCTGCTCTGGAAGCATCCAGATGAAAAAACCTTCAACTAGTAAGACTTaaaatttatttatgaatttaaaaaaacacttaaaagcaGTCAAATCCATTTATataagttttaaaatgatttcacaACATCCTTGGTGTACTGTTGAGGGTTTTTTGACAGTAACCTTGCTTGGTAAATCAGCTAGTGTTTGCGATACTCTGAtaagaaataaaagtaaatacaacagaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtccagaTAAACTTAATATCAATTCTGTATTActgcaaatgtgtgtaaatgtcaaACAAACAAGTAGTCAATATTTTAGAGACttattctttcattctttttctttcggCTGAGTCCTTTATTTTTCATGGGTgtgcctcagcggaatgaactgccaactattccaaacgaacatgcacactccatacaaaaaaacaggctcattctgaaaatgtatctctatatacatttttagagaccactaaatacatcccaggagctactttttttgcagttcttgttttcacgaatccaccagaggccgctgtgtaaacttttttaaatgtcatatttttctcgtgtgaatccaccagaggtcactctCAACTAACTAactagactgactgactgaccgattgactgatccccccaccctcctccttctctaaaaccaaccaatagggtatatgcggaagtatgcagaaggacttaAAATTTGTAAGTAACCTAGGTTAAGTGTTTCCGGTCAACTGTTTGCCATTACAAAATCAGtgcgtctgttttttttttttttttatatcagcgATCTCCTCTGGCTGAGTAATATCCAATATAacgtgggtctcagattgtacaaaaagcactgcatgaaattacatttttagctGCCATGTCTTCAAAataagaacatttattttaccccagtatattcaatggagcttttgcACTAGCCTGATAATCCTGACAGGCCTGTGCGTGTAAACGGCTTTTCTtcttgttttacacttgaacaacaaaataaatgccaaagtctattcaacttaatgtattgtaattacattacaacattgatgctgtaaaaagaatcgtataaaatgaaaaaagtcacattaacccttaaagaccgaatCAGCCGCCCGCGGCTATAAATAAGtcttaagggctctattttgacggtccatgcgcagagcgcaaaacgcagggcgcaaaacgcagggcgcaaacgctttcagggcgtgtcaggacgcgtttttgctaatttaaggatgggaaatctgccttgcgctgcggcgcatgttctaaaagggttgagtttatttttttaatgagttataggtgtgttttgagaataaaccaattagaatctcatctcaAATTCAGAGATCtgagtcagctgcgtcgcaccaagagcgcattcgctatttactggacgcaaagtaagtctaagtggaaaaaatgagcatttcacaagcaaacagttaacagttttttaacagaaaactgttaaacagagcatctactgcgtgagaatgagagataatggaactactttcactttcgctcttggatagggaaacctttagcacagacatcaattagtctataaataaataattttgtttgttaagctcaaatattcgtttcaaaactattcctacattcagttctaatttctagcaaacgaataaatgaataataatagcaaaatgtgctcaaaaacctgagttatatcctaaaacacatgccattgccccatatggtctaagacaggtgggcaaatctaagcttgtttttaataaaacaaatataaatatggatataataaataatactgctaataataataacattatacaaaagcaaattgttatgaatgaactgaaaaagcctcccgagatgaagaagacataaaagcaggggtttttcatatttatgtaggctagaaaattattttaatcctttatatttatattctatatctattcttattataaactatatatatccttaatatttacattttttcatatgtaaagattagtgctgtcaatcgattaaaaaaaattaactaattaatcgcactttttttaaaaaattaatcgcatttaaaatattgaaact

Function

symbol description
spata48 Orthologous to human SPATA48 (spermatogenesis associated 48).

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000109818

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012653 True 4143 mRNA 0.38 9 16027559 16066997

Neighbor

gene id symbol gene type direction distance location
XLOC_006531 ikzf1 coding downstream 33087 15957508 ~ 15994472 (-)
XLOC_006530 ttl coding downstream 98157 15918449 ~ 15929402 (-)
XLOC_006529 si:ch211-57f7.7 coding downstream 162224 15853677 ~ 15865335 (-)
XLOC_006528 bag5 coding downstream 228168 15762278 ~ 15799391 (-)
XLOC_006527 ckba coding downstream 324823 15682075 ~ 15702736 (-)
XLOC_006533 vwc2 coding upstream 83657 16150654 ~ 16191674 (-)
XLOC_006534 zgc:110045 coding upstream 152085 16219082 ~ 16226312 (-)
XLOC_006535 zgc:110045 coding upstream 163559 16230556 ~ 16257848 (-)
XLOC_006536 NA coding upstream 193654 16260651 ~ 16261573 (-)
XLOC_006537 BX323467.1 coding upstream 240770 16307767 ~ 16307883 (-)
XLOC_006471 BX537274.2 misc downstream 5762654 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 15201334 825904 ~ 826225 (-)
XLOC_006526 BX511166.1 non-coding downstream 447407 15575137 ~ 15580152 (-)
XLOC_006525 NA non-coding downstream 569935 15456676 ~ 15457624 (-)
XLOC_006522 NA non-coding downstream 1045979 14950795 ~ 14981580 (-)
XLOC_006519 NA non-coding downstream 1494305 14532720 ~ 14533254 (-)
XLOC_006518 AL928929.1 non-coding downstream 1643021 14384421 ~ 14384538 (-)
XLOC_006538 NA non-coding upstream 801383 16868380 ~ 16879070 (-)
XLOC_006540 NA non-coding upstream 1427300 17494297 ~ 17530536 (-)
XLOC_006541 NA non-coding upstream 1619487 17686484 ~ 17693819 (-)

Expression


Co-expression Network