Item | Value |
---|---|
gene id | XLOC_006533 |
gene name | vwc2 |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007124.7 |
NCBI id | CM002897.2 |
chromosome length | 52186027 |
location | 16150654 ~ 16191674 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
vwc2 | Acts upstream of or within forebrain development. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space. Is expressed in brain; olfactory system; and spinal cord. Orthologous to human VWC2 (von Willebrand factor C domain containing 2). |
id | name | namespace |
---|---|---|
GO:0030514 | negative regulation of BMP signaling pathway | biological_process |
GO:0007399 | nervous system development | biological_process |
GO:0030900 | forebrain development | biological_process |
GO:0005615 | extracellular space | cellular_component |
GO:0032281 | AMPA glutamate receptor complex | cellular_component |
id | description |
---|---|
ko04990 | Domain-containing proteins not elsewhere classified |
id | description |
---|---|
ZDB-GENE-090313-315 | Acts upstream of or within forebrain development. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space. Is expressed in brain; olfactory system; and spinal cord. Orthologous to human VWC2 (von Willebrand factor C domain containing 2). |
ensembl_id | ENSDARG00000076495 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00012654 | True | 1226 | mRNA | 0.51 | 4 | 16150654 | 16191674 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_006532 | SPATA48 | coding | downstream | 83657 | 16027559 ~ 16066997 (-) |
XLOC_006531 | ikzf1 | coding | downstream | 156182 | 15957508 ~ 15994472 (-) |
XLOC_006530 | ttl | coding | downstream | 221252 | 15918449 ~ 15929402 (-) |
XLOC_006529 | si:ch211-57f7.7 | coding | downstream | 285319 | 15853677 ~ 15865335 (-) |
XLOC_006528 | bag5 | coding | downstream | 351263 | 15762278 ~ 15799391 (-) |
XLOC_006534 | zgc:110045 | coding | upstream | 27408 | 16219082 ~ 16226312 (-) |
XLOC_006535 | zgc:110045 | coding | upstream | 38882 | 16230556 ~ 16257848 (-) |
XLOC_006536 | NA | coding | upstream | 68977 | 16260651 ~ 16261573 (-) |
XLOC_006537 | BX323467.1 | coding | upstream | 116093 | 16307767 ~ 16307883 (-) |
XLOC_006538 | NA | coding | upstream | 676706 | 16868380 ~ 16879070 (-) |
XLOC_006471 | BX537274.2 | misc | downstream | 5885749 | 10264741 ~ 10264905 (-) |
XLOC_006338 | rn7sk | misc | downstream | 15324429 | 825904 ~ 826225 (-) |
XLOC_006526 | BX511166.1 | non-coding | downstream | 570502 | 15575137 ~ 15580152 (-) |
XLOC_006525 | NA | non-coding | downstream | 693030 | 15456676 ~ 15457624 (-) |
XLOC_006522 | NA | non-coding | downstream | 1169074 | 14950795 ~ 14981580 (-) |
XLOC_006519 | NA | non-coding | downstream | 1617400 | 14532720 ~ 14533254 (-) |
XLOC_006518 | AL928929.1 | non-coding | downstream | 1766116 | 14384421 ~ 14384538 (-) |
XLOC_006540 | NA | non-coding | upstream | 1302623 | 17494297 ~ 17530536 (-) |
XLOC_006541 | NA | non-coding | upstream | 1494810 | 17686484 ~ 17693819 (-) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01180000_06532667_06556697 | VWC2 | coding | CI01180000 | null | 6532276 ~ 6557504 (+) |