XLOC_006533 (vwc2)



Basic Information


Item Value
gene id XLOC_006533
gene name vwc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 16150654 ~ 16191674 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00012654
CCTTTCTTTCAGTTCTCCAGCAAGAGCTGGCGAGACATTTGCAGCCCTAGTCGTTAGTGGCAGCATTTCAACTCAATTTCCAATTTCCTGAGCGTAGTTGTAAGGTGATGTGGAGACTGATGAGCGATCCTCGAGATCAACTGTGTGACAACTATCTTCACAAAACATCAACCACACCGACGGAAAGATGCAGATGTGACATCGCTTTTGCTGCAATAGTCTCTACCTGCGATTTGAGGATTGTAATGTGAGTCCAGGTGCAGTCCCATCATTTTATCCTGGAGGCGAGGAGGGAGATGCTTCACTCGGCTGCCATGACAACAGGACTTATCTTTGTTACCTGGCTCTTGTACACAAGTGCACGGGGCAATCCCATTGTGTCGGTGCCAGAAGGTGGGGAGAAAGAGCGTTTGGAACGTGTTTTGACCCAAGCCAAGGAGGGTGCGTTGAGTCCAAGTGCGAAACAGCGCTTGGAAGAGTTAAATAATCTTGAACTGGAGGGAATTAAGGGTGGGAACAGATCCACTTCGGGCAGGACCAGACCCAACTTAAGCTCCTTGAGAAAAGGGTCCAAACTACAAGGAAAGACCCTTGAAGCATGGAGTGAGCAAGAATCACTTAAGCAAACTGAAGGAGCTCCTACGGAAGAAGCCAACGTTTCACTGGATGCGATTGATGAATATGCTTACCCTGATTATAGGGGTAAGGGCTGCATGGATGAAACAGGCTTTGTGTTCGCTATTGGCGAAAAATTCACCCCAGGACCATCCACATGCCCATGCTTGTGCACTGACGAAGGTCCTTTGTGTGCACAACCTGAGTGTCCAAAACTTCATCCACGCTGCCTGCGTGTTGACACCAGCCAGTGCTGCCCACAGTGCAAAGAGAAGAAAAACTACTGTGAATTTCGTGGAAAAATCTACTCATCTCTGGAGGAGTTTAAGGTGTCTCCATGTGAGAAATGCCGTTGCGAGCCCAGTGGGGAGGTGCTATGTTCAGTGTCAGCTTGCCCACAGACAGAGTGTGTTGATCCGGAGTATGAGCCTGACCAGTGCTGTCCAGTGTGTAAGAGCGGGCCGAACTGTTACGCGGACACATCGGTGATCCCTGCCGGCCGAGAGGTGAAGATTGACGAATGCACCATCTGCTACTGCACGTACGAGGAGGGCACTTGGCGTATCGAGCGGCAGGCGACCTGCAGCAAGAACGAGTGCCAGCCGAGCTAA

Function


symbol description
vwc2 Acts upstream of or within forebrain development. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space. Is expressed in brain; olfactory system; and spinal cord. Orthologous to human VWC2 (von Willebrand factor C domain containing 2).

GO:

id name namespace
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0007399 nervous system development biological_process
GO:0030900 forebrain development biological_process
GO:0005615 extracellular space cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-090313-315 Acts upstream of or within forebrain development. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space. Is expressed in brain; olfactory system; and spinal cord. Orthologous to human VWC2 (von Willebrand factor C domain containing 2).

Ensembl:

ensembl_id ENSDARG00000076495

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00012654 True 1226 mRNA 0.51 4 16150654 16191674

Neighbor


gene id symbol gene type direction distance location
XLOC_006532 SPATA48 coding downstream 83657 16027559 ~ 16066997 (-)
XLOC_006531 ikzf1 coding downstream 156182 15957508 ~ 15994472 (-)
XLOC_006530 ttl coding downstream 221252 15918449 ~ 15929402 (-)
XLOC_006529 si:ch211-57f7.7 coding downstream 285319 15853677 ~ 15865335 (-)
XLOC_006528 bag5 coding downstream 351263 15762278 ~ 15799391 (-)
XLOC_006534 zgc:110045 coding upstream 27408 16219082 ~ 16226312 (-)
XLOC_006535 zgc:110045 coding upstream 38882 16230556 ~ 16257848 (-)
XLOC_006536 NA coding upstream 68977 16260651 ~ 16261573 (-)
XLOC_006537 BX323467.1 coding upstream 116093 16307767 ~ 16307883 (-)
XLOC_006538 NA coding upstream 676706 16868380 ~ 16879070 (-)
XLOC_006471 BX537274.2 misc downstream 5885749 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 15324429 825904 ~ 826225 (-)
XLOC_006526 BX511166.1 non-coding downstream 570502 15575137 ~ 15580152 (-)
XLOC_006525 NA non-coding downstream 693030 15456676 ~ 15457624 (-)
XLOC_006522 NA non-coding downstream 1169074 14950795 ~ 14981580 (-)
XLOC_006519 NA non-coding downstream 1617400 14532720 ~ 14533254 (-)
XLOC_006518 AL928929.1 non-coding downstream 1766116 14384421 ~ 14384538 (-)
XLOC_006540 NA non-coding upstream 1302623 17494297 ~ 17530536 (-)
XLOC_006541 NA non-coding upstream 1494810 17686484 ~ 17693819 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_06532667_06556697 VWC2 coding CI01180000 null 6532276 ~ 6557504 (+)