XLOC_006534 (zgc:110045)


Basic Information

Item Value
gene id XLOC_006534
gene name zgc:110045
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 16219082 ~ 16226312 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012655
ATGTTTATTGGATGTCGTTTGAGCAGTCTCATTGACAGTGTAGTTATgtttaaagtttcattttgtCAGACACTGAGTCGTGTGTGGCTTACCTTATCATTTCCCTGCATAGGTCTGGAGGCCTCCATTGCAACCAGTTCTCAAGAGTTGAGCATACCTAATGATCTCATCGGCTGCATCATTGGCAGACAGGGCAGTAAGATCAATGAGATTCGCCAGATGTCTGGTGCCCAGATCAAAATTGCCGGGGCCACAGACGGTTCGGCAGTTCGCCACGTCACCATCACGGGCTCCCCGGCCAACATCAGCGTGGCTCAGTACCTAATCAGTGCCAGTTTAGAGATGGCTAAACTGAGCATCCAGGCTGCGTCGTCCGCCAGCGCCGGTGCACCAATCGACCTCGGCCTGGGCTTCTCCCAATCCACACCTTCCGCCTCCACACCCTCCTCCATGGCCGTCCTGACTGCTTCCCCCTCCGCTATTAACGTCCACTCGCCTCAGTCCGTCCCCTCCATCCCCAGCGCCCATTACGCCTTGCCTGTTTCCAGTCTGCTTGGCATGAAAACCGTTCCCCTGCTGGCAGTGCACGCAGCCTCATCCGCAGGCCTTCCGGCAGGCCTCACTCCCTACACCACAAAGATCCCTACCTCATCCGGCATCAAAAAATCTGATCGGCAGAAGTTTGCCCCGTACTGA
>TCONS_00012656
ATGCAGCATATCCCCCTTACCTCCCTTGGGCAGAGCAACCCCACCTTCCCTGGTCTGGAGGCCTCCATTGCAACCAGTTCTCAAGAGTTGAGCATACCTAATGATCTCATCGGCTGCATCATTGGCAGACAGGGCAGTAAGATCAATGAGATTCGCCAGATGTCTGGTGCCCAGATCAAAATTGCCGGGGCCACAGACGGTTCGGCAGTTCGCCACGTCACCATCACGGGCTCCCCGGCCAACATCAGCGTGGCTCAGTACCTAATCAGTGCCAGTTTAGAGATGGCTAAACTGAGCATCCAGGCTGCGTCGTCCGCCAGCGCCGGTGCACCAATCGACCTCGGCCTGGGCTTCTCCCAATCCACACCTTCCGCCTCCACACCCTCCTCCATGGCCGTCCTGACTGCTTCCCCCTCCGCTATTAACGTCCACTCGCCTCAGTCCGTCCCCTCCATCCCCAGCGCCCATTACGCCTTGCCTGTTTCCAGTCTGCTTGGCATGAAAACCGTTCCCCTGCTGGCAGTGCACGCAGCCTCATCCGCAGGCCTTCCGGCAGGCCTCACTCCCTACACCACAAAGATCCCTACCTCATCCGGCATCAAAAAATCTGATCGGCAGAAGTTTGCCCCGTACTGA

Function

symbol description
zgc:110045 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleus.

GO:

id name namespace
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050706-149 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDARG00000110961

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012655 False 696 mRNA 0.55 3 16219082 16222388
TCONS_00012656 True 636 mRNA 0.58 4 16219082 16226312

Neighbor

gene id symbol gene type direction distance location
XLOC_006533 vwc2 coding downstream 27408 16150654 ~ 16191674 (-)
XLOC_006532 SPATA48 coding downstream 152085 16027559 ~ 16066997 (-)
XLOC_006531 ikzf1 coding downstream 224610 15957508 ~ 15994472 (-)
XLOC_006530 ttl coding downstream 289680 15918449 ~ 15929402 (-)
XLOC_006529 si:ch211-57f7.7 coding downstream 353747 15853677 ~ 15865335 (-)
XLOC_006535 zgc:110045 coding upstream 4244 16230556 ~ 16257848 (-)
XLOC_006536 NA coding upstream 34339 16260651 ~ 16261573 (-)
XLOC_006537 BX323467.1 coding upstream 81455 16307767 ~ 16307883 (-)
XLOC_006538 NA coding upstream 642068 16868380 ~ 16879070 (-)
XLOC_006539 lrmda coding upstream 696393 16922705 ~ 17464654 (-)
XLOC_006471 BX537274.2 misc downstream 5954177 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 15392857 825904 ~ 826225 (-)
XLOC_006526 BX511166.1 non-coding downstream 638930 15575137 ~ 15580152 (-)
XLOC_006525 NA non-coding downstream 761458 15456676 ~ 15457624 (-)
XLOC_006522 NA non-coding downstream 1237502 14950795 ~ 14981580 (-)
XLOC_006519 NA non-coding downstream 1685828 14532720 ~ 14533254 (-)
XLOC_006518 AL928929.1 non-coding downstream 1834544 14384421 ~ 14384538 (-)
XLOC_006540 NA non-coding upstream 1267985 17494297 ~ 17530536 (-)
XLOC_006541 NA non-coding upstream 1460172 17686484 ~ 17693819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_06503211_06517041 NA coding CI01180000 null 6503211 ~ 6517102 (+)