XLOC_006535 (zgc:110045)


Basic Information

Item Value
gene id XLOC_006535
gene name zgc:110045
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 16230556 ~ 16257848 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012657
GGAATCATACACACTCTGGAGCCGCAAACGTTAACTCATCCTGGATTGACAAGGAAAAGAAGCCTCAGTGAAGAAAGTAACAGGCATCTCTGCTCTATCTCAACCTCCATCACATCTCAGCCATTTCTACTGTTCTCCGCTCTTAAACAAGCTCCTCTTCTGCTGGAGTGTCATGGAAAAAGGGACCACATTTCATCTAACAGCTTATaGACAGTCTGTTTGAAGCATTGAGACCCAAGAGAagaatgaatatgaatgagagGGAGGGAGGAGTATCTGAGGGGGGGCTAAATGTCACCCTCACCATCCGCCTACTAATGCATGGCAAGGAGGTTGGAAGTATCATTGGGAAGAAAGGAGAGACTGTCAAAAAAATGAGAGAGGAGAGTGGAGCCCGAATTAATATATCTGACGGTTCCAGTCCAGAGCGCATTGTCACCATCACTGGGGCGTCTGAGGTCATTTTCAAAGCCTTCGCCATGATTGCAGAGAAGTTTGAGGAGGATATCTTGGCATCCATGATAAACAGCACGGTGACAAGCAGGCCTCCTGTGACATTGCGCCTCGTCTTCCCTGCCAGTCAGTGCGGTTCGCTCATTGGTAAAGGAGGCTCGAAGATCAAAGAGATCAGAGAGAGCACAGGTGCCCAGGTCCAGGTCGCAGGAGACCTACTGCCAGACTCGACTGAGAGAGCTGTGACCATCTCTGGCACCCCACACGCCATCACCCAATGCGTGAAACACATCTGCACCGTCATGCTGGAGTCACCACCTAAAGGAGCCACCATTCCATACCGACCCAAACCCTCTGCAGGTGGCGGCCACACAGTGTTGACGCAACCGCATGCTGCGACGGCATTTGCTATTCCAGGACAGTTTGCCATTCCACCCCAAGACGTGAGTGTTCGTCCTGCTGGCTGATCAGTATCATTCACGGCACAGCACACTTCACAACACCACTGCAGTGTCTCCCAGCCCTTGCACAACCACAAATATCCCACTGTGTTCCTCACACACACCTGAGAGCCAATCTCCCTTTCCCTCCAAACACACTCAATCCTTCACTAACTTAGGGCTTCCTTCAAACGAGAATACCAGATTATGATGGTCTCTGCCCACCGTTTCTTTAATATGTGCTGTAGTGTCACTAACATTGGTTATTTCGCATCACGGTTAGGACACAAATAAAGAACGTGTGTTAAATCAATCCATTACACAAATGCTATAATTACAGCAGTTGCAATGCAGCACTGTATTGATTAAACCCTACACATTATGGATAGGGATTGATTTAAACCTCTAAATTTAACTAGAACAGTTCAGTAACGTAATCACGCCTAACTGTTTCCAATACAGAATCTATTATGTggtgcagtggtgtaaagtaacaaattacaaataatcaaatt

Function

symbol description
zgc:110045 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleus.

GO:

id name namespace
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050706-149 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDARG00000057141

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012657 True 1408 mRNA 0.47 10 16230556 16257848

Neighbor

gene id symbol gene type direction distance location
XLOC_006534 zgc:110045 coding downstream 4244 16219082 ~ 16226312 (-)
XLOC_006533 vwc2 coding downstream 38882 16150654 ~ 16191674 (-)
XLOC_006532 SPATA48 coding downstream 163559 16027559 ~ 16066997 (-)
XLOC_006531 ikzf1 coding downstream 236084 15957508 ~ 15994472 (-)
XLOC_006530 ttl coding downstream 301154 15918449 ~ 15929402 (-)
XLOC_006536 NA coding upstream 2803 16260651 ~ 16261573 (-)
XLOC_006537 BX323467.1 coding upstream 49919 16307767 ~ 16307883 (-)
XLOC_006538 NA coding upstream 610532 16868380 ~ 16879070 (-)
XLOC_006539 lrmda coding upstream 664857 16922705 ~ 17464654 (-)
XLOC_006540 NA coding upstream 1236449 17494297 ~ 17530536 (-)
XLOC_006471 BX537274.2 misc downstream 5965651 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 15404331 825904 ~ 826225 (-)
XLOC_006526 BX511166.1 non-coding downstream 650404 15575137 ~ 15580152 (-)
XLOC_006525 NA non-coding downstream 772932 15456676 ~ 15457624 (-)
XLOC_006522 NA non-coding downstream 1248976 14950795 ~ 14981580 (-)
XLOC_006519 NA non-coding downstream 1697302 14532720 ~ 14533254 (-)
XLOC_006518 AL928929.1 non-coding downstream 1846018 14384421 ~ 14384538 (-)
XLOC_006541 NA non-coding upstream 1428636 17686484 ~ 17693819 (-)

Expression


Co-expression Network