XLOC_006536


Basic Information

Item Value
gene id XLOC_006536
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 16260651 ~ 16261573 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013769
CAGAAAGTAAACACTGTAGCACTTCAGGCCGACGCTTTCAACTGTCAAATAAGTTAGCAAGCTGTTCATTTTACGTCCAATTCAAAAGGTATTTAAGTACATTTGATGGCTTACAAAAAGACAGTCATACACGAGATTAAGCAGCAACGAATGCAGGTTTTTAACGTTACCACATGAAGAAATTCAAGGCACCTTTTACCTTTAATCCGTTTAAATTCCTGATCTATCAGAGCCTGCTGATCAACGCCGTACCCGTAGTAGTGTCCAAAACTCTTAAAAACATCAAAAGTGCATAAGTCCTGAAAGTCTTGCAAAGACCGAGTATCCATTTTTGCTCAGTCTGAAAGTCCAGAGAGAGCCCTCCTTCCCGAATTTATGACGAATAAAGGGGAGTTTCACTGAAGTCCTGTGACGTTTCTGGAGCACGTCTGGTGAATACAGAGGGAAGTTATCAAAAATTGAATAGAGAATAACTGATCACACGTTATCTTGAGACATAATTTTCACTGCAAATATTTGACACTATTGATCAAAATAGTAGGGAGAGTAGGTTGGTGTTGAAAGAAATGAATGCTTTTATCAGATTCTCGCGCTTCAGTTAATccttcatcaaataaaaaaaaacctgtacagcttctacaaaatattaagcagcacaactgtttaaCTTCAGACATTAGGAAGATTGATTTCAAAAAgattatgtgacactgaagactagagAATGGTTTACATTGAAGACTAGTGTAATGATATTAATCTTTGTCATCACAGGAATAAAGTGcattctaaaacatttaaaatagaaatcaatcaatcaatcaatcaatcaata

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013769 True 835 lncRNA 0.36 2 16260651 16261573

Neighbor

gene id symbol gene type direction distance location
XLOC_006535 zgc:110045 coding downstream 2803 16230556 ~ 16257848 (-)
XLOC_006534 zgc:110045 coding downstream 34339 16219082 ~ 16226312 (-)
XLOC_006533 vwc2 coding downstream 68977 16150654 ~ 16191674 (-)
XLOC_006532 SPATA48 coding downstream 193654 16027559 ~ 16066997 (-)
XLOC_006531 ikzf1 coding downstream 266179 15957508 ~ 15994472 (-)
XLOC_006537 BX323467.1 coding upstream 46194 16307767 ~ 16307883 (-)
XLOC_006538 NA coding upstream 606807 16868380 ~ 16879070 (-)
XLOC_006539 lrmda coding upstream 661132 16922705 ~ 17464654 (-)
XLOC_006540 NA coding upstream 1232724 17494297 ~ 17530536 (-)
XLOC_006541 NA coding upstream 1424911 17686484 ~ 17693819 (-)
XLOC_006471 BX537274.2 misc downstream 5995746 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 15434426 825904 ~ 826225 (-)
XLOC_006526 BX511166.1 non-coding downstream 680499 15575137 ~ 15580152 (-)
XLOC_006525 NA non-coding downstream 803027 15456676 ~ 15457624 (-)
XLOC_006522 NA non-coding downstream 1279071 14950795 ~ 14981580 (-)
XLOC_006519 NA non-coding downstream 1727397 14532720 ~ 14533254 (-)
XLOC_006518 AL928929.1 non-coding downstream 1876113 14384421 ~ 14384538 (-)
XLOC_006551 CR932438.1 non-coding upstream 2383317 18644890 ~ 18645005 (-)

Expression


Co-expression Network