XLOC_006538


Basic Information

Item Value
gene id XLOC_006538
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 16868380 ~ 16879070 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013770
AGCAAACTCACAAACAGAACGctggaaacaaacacacacagcatacTATCTGTGCCAAGTGTGTTAAAACCACAGAACGCACAGTACACACACTCTGCTGGGTTAAAGGGCCAACTTACTTCTGTTTGTCACGGGCTTCACGTGCTTTGCTGCTGCGGTTCTGCCGGTTGGTGGCTGGGATGGAGTGAACAGACGAGCTCTTCTTGCTGGAGGAATGGGACGAATGGGAGGAGTGGGACAGGCTCGCTCGGGACTGGCCCGCGTTGTGGTCGAACTGCATCAGACAGAAGATCAGGTCCGTGGGCACCATCTCAAACTCATAAGGCGGGTTTGTGATGACATATCTGAGCACATGGGAAAACGGCACACATTCAGCCATCTGTTAAAAGACTTCCTGTGAGCTAAGGAAGAGAAATGTCAGTCTTTCAGACAGGCCGCTGATGAAAAGGAGCCTGGGCCAAAGAATTGAACTGCTGGGAGATGCTATGAAAACAGCCACAAGGACAGACTCGCATGATCAAAGGCCTAGTGATGctctgagaaagaaagaaagaaaaaaaaaatcctttaaaaaaaaaaaaggccaaaaacaAGACAGTCAATTTCAACCAGAACTAAGGATAAAAATGTGTTCAAAGTGATGCCATGGGAGCAGGCCTCAGCTGCAGCGGGAGAAATCAAGACAAGCCGATGAAGGAGGCAGTGCATCAGAGTAGCGGAGGACAAAGGCGCAGCTTACCCAGTTCTGTTATCATTTGTATGTTGGTTCCACTGTTTTtttcctgactgaatgaaacCAAAGGCAGTAGTTTGCCAGGCTTAGCTAATGATGATAAAACAGTGTTGAGGGGAGACAGTTATTGAAACAAGTTCAAAGCCAGAGAAAGCATAAACGAGAGTATCATGTCAAGAGTGGGATTAGAAATCTAAAGGTACACTGTCAGGATGAAGCGCTTCTCTGAGAAACTCTATGGAACAGTTCAGCCGTGTTTGTTCATGATAACGGGGATATCGCGAAGGCTTACTGCACAAGAAGATTACTATGAAGCATATAGAACGGAATTACTAATCACTCCGAACAGGTTTCTTGTGCAATCGCACATATTCTAAAATTGATATAGCAGACCAGATTTACAGAGTGCTCCATTGACGGTCAATGATTCGCTCGTGTAAAGAACTTAATGTGTCCGGTTTGCTGGCAGTCTGCTGATAAACATTCGAAAAGTACTCTTGAATTATCATGTATAATTGAATTTTATGCAAGCTTCCacaaagcagtttaaaatttgtGCAGAGAACTAAACCAAACATTTTTTGATGTTGTTTAAATGTGTGCATGGAATAACTTAGACTTTTTAGTGCTTTGTTAAATTACTCTTctcaatttctttaataaataaatagttgtaaCTTCCTGCCATGATCCATAaatgtcaaccctcccgttttttacaggattctcctgtattttacaattctattctGCTATCATCCCTAAAGGTATTT

Function

GO:

id name namespace
GO:0030672 synaptic vesicle membrane cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013770 True 1506 lncRNA 0.42 2 16868380 16879070

Neighbor

gene id symbol gene type direction distance location
XLOC_006537 BX323467.1 coding downstream 560497 16307767 ~ 16307883 (-)
XLOC_006536 NA coding downstream 606807 16260651 ~ 16261573 (-)
XLOC_006535 zgc:110045 coding downstream 610532 16230556 ~ 16257848 (-)
XLOC_006534 zgc:110045 coding downstream 642068 16219082 ~ 16226312 (-)
XLOC_006533 vwc2 coding downstream 676706 16150654 ~ 16191674 (-)
XLOC_006539 lrmda coding upstream 43635 16922705 ~ 17464654 (-)
XLOC_006540 NA coding upstream 615227 17494297 ~ 17530536 (-)
XLOC_006541 NA coding upstream 807414 17686484 ~ 17693819 (-)
XLOC_006542 vdac2 coding upstream 835226 17714296 ~ 17729474 (-)
XLOC_006543 march8 coding upstream 872796 17751866 ~ 18011208 (-)
XLOC_006471 BX537274.2 misc downstream 6603475 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 16042155 825904 ~ 826225 (-)
XLOC_006526 BX511166.1 non-coding downstream 1288228 15575137 ~ 15580152 (-)
XLOC_006525 NA non-coding downstream 1410756 15456676 ~ 15457624 (-)
XLOC_006522 NA non-coding downstream 1886800 14950795 ~ 14981580 (-)
XLOC_006551 CR932438.1 non-coding upstream 1765820 18644890 ~ 18645005 (-)
XLOC_006552 CR932438.2 non-coding upstream 1770422 18649492 ~ 18649682 (-)
XLOC_006554 CR932361.2 non-coding upstream 1836240 18715310 ~ 18715426 (-)

Expression


Co-expression Network